Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 DLX3-201ENST00000434704 2602 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
BDNFP23560 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.41□□□□□ -0.1
BDNFP23560 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
BDNFP23560 RPL10-203ENST00000406022 748 ntTSL 3 BASIC14.41□□□□□ -0.1
BDNFP23560 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC14.41□□□□□ -0.1
BDNFP23560 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 KRT18P4-201ENST00000422599 1288 ntBASIC14.41□□□□□ -0.1
BDNFP23560 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC14.41□□□□□ -0.1
BDNFP23560 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC14.41□□□□□ -0.1
BDNFP23560 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 ASS1P2-201ENST00000439895 1223 ntBASIC14.41□□□□□ -0.1
BDNFP23560 AC114501.1-201ENST00000445949 172 ntBASIC14.41□□□□□ -0.1
BDNFP23560 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC14.41□□□□□ -0.1
BDNFP23560 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.41□□□□□ -0.1
BDNFP23560 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 PIGCP1-201ENST00000527583 895 ntBASIC14.41□□□□□ -0.1
BDNFP23560 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
BDNFP23560 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 C2orf69P1-201ENST00000563532 1093 ntBASIC14.41□□□□□ -0.1
BDNFP23560 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC14.41□□□□□ -0.1
BDNFP23560 AC073592.2-201ENST00000623062 780 ntBASIC14.41□□□□□ -0.1
BDNFP23560 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC14.41□□□□□ -0.1
BDNFP23560 WNT7A-201ENST00000285018 4041 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC14.41□□□□□ -0.1
BDNFP23560 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC14.41□□□□□ -0.1
BDNFP23560 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 WDR24-201ENST00000248142 2763 ntTSL 5 BASIC14.41□□□□□ -0.1
BDNFP23560 IL12RB1-203ENST00000593993 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
BDNFP23560 AC108024.1-201ENST00000626286 1721 ntBASIC14.41□□□□□ -0.1
BDNFP23560 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC14.41□□□□□ -0.1
BDNFP23560 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC14.41□□□□□ -0.1
BDNFP23560 SMTN-201ENST00000333137 3295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
BDNFP23560 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 CIITA-213ENST00000618327 4657 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
BDNFP23560 SRP9-201ENST00000304786 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
BDNFP23560 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
BDNFP23560 AL391647.1-201ENST00000395664 511 ntBASIC14.4□□□□□ -0.1
BDNFP23560 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
BDNFP23560 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC14.4□□□□□ -0.1
BDNFP23560 KRT18P46-201ENST00000435568 1279 ntBASIC14.4□□□□□ -0.1
BDNFP23560 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC14.4□□□□□ -0.1
BDNFP23560 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC14.4□□□□□ -0.1
BDNFP23560 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC14.4□□□□□ -0.1
BDNFP23560 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
BDNFP23560 AC092903.1-201ENST00000466506 262 ntBASIC14.4□□□□□ -0.1
BDNFP23560 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 AP005264.6-204ENST00000588436 719 ntBASIC14.4□□□□□ -0.1
BDNFP23560 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC14.4□□□□□ -0.1
BDNFP23560 AC073869.4-201ENST00000620841 800 ntBASIC14.4□□□□□ -0.1
BDNFP23560 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC14.4□□□□□ -0.1
BDNFP23560 AC002472.4-201ENST00000641915 272 ntBASIC14.4□□□□□ -0.1
BDNFP23560 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 RHPN1-AS1-201ENST00000518049 1918 ntBASIC14.4□□□□□ -0.1
BDNFP23560 GUCY2EP-203ENST00000531117 1918 ntBASIC14.4□□□□□ -0.1
BDNFP23560 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
BDNFP23560 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC14.4□□□□□ -0.1
BDNFP23560 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
BDNFP23560 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC14.4□□□□□ -0.1
BDNFP23560 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC14.4□□□□□ -0.1
BDNFP23560 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
BDNFP23560 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
BDNFP23560 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC14.39□□□□□ -0.11
BDNFP23560 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BDNFP23560 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC14.39□□□□□ -0.11
BDNFP23560 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 68.6 ms