Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SMIM11A-201ENST00000399292 850 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 AL357060.2-204ENST00000448942 963 ntTSL 5 BASIC13.53□□□□□ -0.24
COL6A3P12111 LINC02105-202ENST00000511953 870 ntTSL 3 BASIC13.53□□□□□ -0.24
COL6A3P12111 AC078776.1-201ENST00000546558 562 ntTSL 4 BASIC13.53□□□□□ -0.24
COL6A3P12111 AC009088.4-201ENST00000575892 280 ntBASIC13.53□□□□□ -0.24
COL6A3P12111 NOSIP-204ENST00000596358 1005 ntAPPRIS P2 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 OR52I2-202ENST00000641486 1115 ntAPPRIS ALT2 BASIC13.53□□□□□ -0.24
COL6A3P12111 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
COL6A3P12111 AC109326.1-201ENST00000624705 1321 ntBASIC13.52□□□□□ -0.24
COL6A3P12111 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A3P12111 OTUD6B-AS1-202ENST00000524003 2171 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A3P12111 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A3P12111 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC13.52□□□□□ -0.24
COL6A3P12111 PCDHB19P-202ENST00000625133 2914 ntBASIC13.52□□□□□ -0.24
COL6A3P12111 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.24
COL6A3P12111 GLT6D1-201ENST00000371763 1526 ntAPPRIS P2 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A3P12111 GLT6D1-202ENST00000613244 1523 ntAPPRIS ALT2 TSL 5 BASIC13.52□□□□□ -0.24
COL6A3P12111 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.24
COL6A3P12111 UFSP2-201ENST00000264689 1630 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.24
COL6A3P12111 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.52□□□□□ -0.24
COL6A3P12111 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC13.52□□□□□ -0.24
COL6A3P12111 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC13.52□□□□□ -0.24
COL6A3P12111 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A3P12111 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A3P12111 MECR-202ENST00000373791 2416 ntTSL 2 BASIC13.52□□□□□ -0.24
COL6A3P12111 AC006450.1-201ENST00000421041 460 ntTSL 3 BASIC13.52□□□□□ -0.24
COL6A3P12111 CLDN24-201ENST00000514470 663 ntBASIC13.52□□□□□ -0.24
COL6A3P12111 CLDN24-202ENST00000541814 663 ntAPPRIS P1 BASIC13.52□□□□□ -0.24
COL6A3P12111 AC009061.2-202ENST00000602596 696 ntTSL 2 BASIC13.52□□□□□ -0.24
COL6A3P12111 SSX3-204ENST00000612497 1030 ntTSL 5 BASIC13.52□□□□□ -0.24
COL6A3P12111 GPSM3-210ENST00000619085 1177 ntTSL 5 BASIC13.52□□□□□ -0.24
COL6A3P12111 TGM3-201ENST00000381458 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
COL6A3P12111 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A3P12111 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC13.52□□□□□ -0.25
COL6A3P12111 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC13.52□□□□□ -0.25
COL6A3P12111 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC13.52□□□□□ -0.25
COL6A3P12111 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A3P12111 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A3P12111 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A3P12111 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A3P12111 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A3P12111 MRPL55-207ENST00000366733 834 ntAPPRIS P1 TSL 2 BASIC13.52□□□□□ -0.25
COL6A3P12111 IGLV1-40-201ENST00000390299 407 ntAPPRIS P1 BASIC13.52□□□□□ -0.25
COL6A3P12111 ETV4-202ENST00000393664 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A3P12111 PAX5-206ENST00000414447 1056 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
COL6A3P12111 AC095350.1-201ENST00000443685 1711 ntTSL 5 BASIC13.52□□□□□ -0.25
COL6A3P12111 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC13.52□□□□□ -0.25
COL6A3P12111 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC13.52□□□□□ -0.25
COL6A3P12111 AC009093.9-201ENST00000566038 1611 ntBASIC13.52□□□□□ -0.25
COL6A3P12111 AC124319.1-201ENST00000576808 653 ntTSL 5 BASIC13.52□□□□□ -0.25
COL6A3P12111 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 SAMMSON-221ENST00000641715 1546 ntBASIC13.51□□□□□ -0.25
COL6A3P12111 AL669918.1-201ENST00000452392 2705 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 COX6B1-201ENST00000246554 667 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 NUDT7-201ENST00000268533 1096 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 AC245128.2-201ENST00000412970 284 ntBASIC13.51□□□□□ -0.25
COL6A3P12111 AL590302.2-201ENST00000435810 1122 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 SOX5-204ENST00000441133 638 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 NUDT7-205ENST00000564085 899 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 AC024361.1-201ENST00000572594 642 ntBASIC13.51□□□□□ -0.25
COL6A3P12111 LINC01535-204ENST00000591116 815 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A3P12111 NUDT7-207ENST00000613075 1073 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A3P12111 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 AC105219.4-201ENST00000529743 1809 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A3P12111 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 HCK-208ENST00000534862 1581 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 HCK-211ENST00000639405 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 ACER1-201ENST00000301452 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 MLN-201ENST00000266003 527 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 ULBP3-201ENST00000367339 988 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 RPL19P20-201ENST00000415648 591 ntBASIC13.51□□□□□ -0.25
COL6A3P12111 LATS2-AS1-201ENST00000422510 632 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 ARL17B-202ENST00000450673 743 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 AC127496.3-201ENST00000576032 494 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A3P12111 AC011472.2-201ENST00000586356 655 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
COL6A3P12111 AC007424.1-201ENST00000552582 1641 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
COL6A3P12111 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 SGK494-201ENST00000301037 1233 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
COL6A3P12111 JPT2-202ENST00000382710 962 ntTSL 2 BASIC13.51□□□□□ -0.25
COL6A3P12111 CIDECP-205ENST00000433871 770 ntBASIC13.51□□□□□ -0.25
COL6A3P12111 AC099796.2-201ENST00000444140 108 ntBASIC13.51□□□□□ -0.25
COL6A3P12111 Z93930.2-201ENST00000458080 505 ntTSL 3 BASIC13.51□□□□□ -0.25
COL6A3P12111 IGHV3-6-201ENST00000518407 347 ntBASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms