RNA–Protein interactions for RNA: ENST00000399292.7

SMIM11A-201, Transcript of small integral membrane protein 11A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMIM11A, Length 850 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-201ENST00000399292 AEBP2Q6ZN18 517 aaPredicted RBP38.27■■■■□ 3.72
SMIM11A-201ENST00000399292 CHIC1Q5VXU3 224 aa36.51■■■■□ 3.44
SMIM11A-201ENST00000399292 SENP3Q9H4L4 574 aaPredicted RBP32.65■■■□□ 2.82
SMIM11A-201ENST00000399292 PHF23Q9BUL5 403 aaPredicted RBP32.23■■■□□ 2.75
SMIM11A-201ENST00000399292 FOXD1Q16676 465 aa30.39■■■□□ 2.46
SMIM11A-201ENST00000399292 PLPPR3Q6T4P5 718 aa29.24■■■□□ 2.27
SMIM11A-201ENST00000399292 NISCHQ9Y2I1 1504 aa28.71■■■□□ 2.19
SMIM11A-201ENST00000399292 PPP6R1Q9UPN7 881 aa28.51■■■□□ 2.15
SMIM11A-201ENST00000399292 ADRA2BP18089 450 aa28.43■■■□□ 2.14
SMIM11A-201ENST00000399292 PIAS4Q8N2W9 510 aaPredicted RBP28.43■■■□□ 2.14
SMIM11A-201ENST00000399292 MSH5O43196 834 aa28.41■■■□□ 2.14
SMIM11A-201ENST00000399292 POTEDQ86YR6 584 aa27.46■■□□□ 1.99
SMIM11A-201ENST00000399292 MAPK8IP2Q13387 824 aaPredicted RBP26.06■■□□□ 1.76
SMIM11A-201ENST00000399292 SCAF1Q9H7N4 1312 aaKnown RBP26.06■■□□□ 1.76
SMIM11A-201ENST00000399292 DMRT2Q9Y5R5 561 aa25.91■■□□□ 1.74
SMIM11A-201ENST00000399292 PPP4R3CPQ6ZMV5 832 aa25.64■■□□□ 1.7
SMIM11A-201ENST00000399292 CCDC180Q9P1Z9 1646 aa25.52■■□□□ 1.68
SMIM11A-201ENST00000399292 ABCC9O60706 1549 aa25.31■■□□□ 1.64
SMIM11A-201ENST00000399292 CNKSR2Q8WXI2 1034 aa25.14■■□□□ 1.62
SMIM11A-201ENST00000399292 HOXD11P31277 338 aaPredicted RBP25.02■■□□□ 1.6
SMIM11A-201ENST00000399292 RNF216Q9NWF9 866 aaPredicted RBP24.87■■□□□ 1.57
SMIM11A-201ENST00000399292 DCAF8L1A6NGE4 600 aa24.8■■□□□ 1.56
SMIM11A-201ENST00000399292 NCBP3Q53F19 620 aaKnown RBP24.71■■□□□ 1.55
SMIM11A-201ENST00000399292 NPM3O75607 178 aaKnown RBP24.33■■□□□ 1.49
SMIM11A-201ENST00000399292 DCAF8L2P0C7V8 631 aa24.26■■□□□ 1.47
SMIM11A-201ENST00000399292 CACNB1Q02641 598 aaPredicted RBP24.26■■□□□ 1.47
SMIM11A-201ENST00000399292 RNF39Q9H2S5 420 aa24.24■■□□□ 1.47
SMIM11A-201ENST00000399292 RB1CC1Q8TDY2 1594 aa24.2■■□□□ 1.47
SMIM11A-201ENST00000399292 DNAJC5BQ9UF47 199 aa24.17■■□□□ 1.46
SMIM11A-201ENST00000399292 NACADO15069 1562 aa24.13■■□□□ 1.45
SMIM11A-201ENST00000399292 KCNA4P22459 653 aa23.99■■□□□ 1.43
SMIM11A-201ENST00000399292 MYO15BQ96JP2 1530 aa23.91■■□□□ 1.42
SMIM11A-201ENST00000399292 C1QBPQ07021 282 aaKnown RBP23.91■■□□□ 1.42
SMIM11A-201ENST00000399292 ZCCHC6Q5VYS8 1495 aaKnown RBP23.83■■□□□ 1.41
SMIM11A-201ENST00000399292 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.82■■□□□ 1.4
SMIM11A-201ENST00000399292 DCAF1Q9Y4B6 1507 aa23.72■■□□□ 1.39
SMIM11A-201ENST00000399292 PABPN1Q86U42 306 aaKnown RBP eCLIP23.7■■□□□ 1.38
SMIM11A-201ENST00000399292 UNC13AQ9UPW8 1703 aa23.53■■□□□ 1.36
SMIM11A-201ENST00000399292 BICRAQ9NZM4 1560 aa23.45■■□□□ 1.34
SMIM11A-201ENST00000399292 U3KPZ7 1027 aaPredicted RBP23.34■■□□□ 1.33
SMIM11A-201ENST00000399292 SCRIBQ14160 1630 aa23.32■■□□□ 1.32
SMIM11A-201ENST00000399292 SLC4A2P04920 1241 aa23.21■■□□□ 1.31
SMIM11A-201ENST00000399292 SHROOM4Q9ULL8 1493 aa23.2■■□□□ 1.3
SMIM11A-201ENST00000399292 SPINK5Q9NQ38 1064 aaPredicted RBP22.94■■□□□ 1.26
SMIM11A-201ENST00000399292 CAPN15O75808 1086 aa22.9■■□□□ 1.26
SMIM11A-201ENST00000399292 EIF4G1Q04637 1599 aaKnown RBP22.87■■□□□ 1.25
SMIM11A-201ENST00000399292 CC2D2AQ9P2K1 1620 aa22.83■■□□□ 1.25
SMIM11A-201ENST00000399292 CECR2Q9BXF3 1484 aa22.77■■□□□ 1.24
SMIM11A-201ENST00000399292 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.75■■□□□ 1.23
SMIM11A-201ENST00000399292 DSG3P32926 999 aa22.75■■□□□ 1.23
SMIM11A-201ENST00000399292 HNRNPUL2Q1KMD3 747 aaKnown RBP22.75■■□□□ 1.23
SMIM11A-201ENST00000399292 APLP2Q06481 763 aa22.74■■□□□ 1.23
SMIM11A-201ENST00000399292 SLC4A1APQ9BWU0 796 aaKnown RBP22.69■■□□□ 1.22
SMIM11A-201ENST00000399292 SAMD1Q6SPF0 538 aaPredicted RBP22.63■■□□□ 1.21
SMIM11A-201ENST00000399292 TRHP20396 242 aaPredicted RBP22.56■■□□□ 1.2
SMIM11A-201ENST00000399292 ZNF219Q9P2Y4 722 aaPredicted RBP22.56■■□□□ 1.2
SMIM11A-201ENST00000399292 MYCNP04198 464 aaPredicted RBP22.52■■□□□ 1.2
SMIM11A-201ENST00000399292 ABCB7O75027 752 aa22.37■■□□□ 1.17
SMIM11A-201ENST00000399292 FOXD4L1Q9NU39 408 aa22.37■■□□□ 1.17
SMIM11A-201ENST00000399292 NCAPD3P42695 1498 aa22.31■■□□□ 1.16
SMIM11A-201ENST00000399292 SMARCA4P51532 1647 aa22.28■■□□□ 1.16
SMIM11A-201ENST00000399292 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
SMIM11A-201ENST00000399292 BAZ1AQ9NRL2 1556 aaPredicted RBP22.26■■□□□ 1.15
SMIM11A-201ENST00000399292 SMARCA2P51531 1590 aa22.21■■□□□ 1.15
SMIM11A-201ENST00000399292 MROH2BQ7Z745 1585 aa22.12■■□□□ 1.13
SMIM11A-201ENST00000399292 HMGXB3Q12766 1538 aa22.11■■□□□ 1.13
SMIM11A-201ENST00000399292 BAZ1BQ9UIG0 1483 aaKnown RBP22.08■■□□□ 1.12
SMIM11A-201ENST00000399292 PEG3Q9GZU2 1588 aa22.06■■□□□ 1.12
SMIM11A-201ENST00000399292 ZBTB22O15209 634 aa22.05■■□□□ 1.12
SMIM11A-201ENST00000399292 POLA2Q14181 598 aa21.99■■□□□ 1.11
SMIM11A-201ENST00000399292 ATF5Q9Y2D1 282 aaPredicted RBP21.96■■□□□ 1.11
SMIM11A-201ENST00000399292 DNAJC5Q9H3Z4 198 aa21.87■■□□□ 1.09
SMIM11A-201ENST00000399292 ERCC6Q03468 1493 aa21.84■■□□□ 1.09
SMIM11A-201ENST00000399292 WIZO95785 1651 aa21.83■■□□□ 1.09
SMIM11A-201ENST00000399292 RSF1Q96T23 1441 aaPredicted RBP21.82■■□□□ 1.08
SMIM11A-201ENST00000399292 NESP48681 1621 aa21.82■■□□□ 1.08
SMIM11A-201ENST00000399292 RBM42Q9BTD8 480 aaKnown RBP21.73■■□□□ 1.07
SMIM11A-201ENST00000399292 LAMC3Q9Y6N6 1575 aa21.7■■□□□ 1.06
SMIM11A-201ENST00000399292 ATXN8OSP0DMR3 200 aa21.69■■□□□ 1.06
SMIM11A-201ENST00000399292 CADPSQ9ULU8 1353 aa21.68■■□□□ 1.06
SMIM11A-201ENST00000399292 CUX2O14529 1486 aa21.66■■□□□ 1.06
SMIM11A-201ENST00000399292 PDS5BQ9NTI5 1447 aa21.65■■□□□ 1.06
SMIM11A-201ENST00000399292 ZBTB12Q9Y330 459 aaPredicted RBP21.61■■□□□ 1.05
SMIM11A-201ENST00000399292 TOP2AP11388 1531 aaKnown RBP21.6■■□□□ 1.05
SMIM11A-201ENST00000399292 POTEHQ6S545 545 aa21.55■■□□□ 1.04
SMIM11A-201ENST00000399292 CFTRP13569 1480 aa21.46■■□□□ 1.03
SMIM11A-201ENST00000399292 KIF21AQ7Z4S6 1674 aa21.46■■□□□ 1.03
SMIM11A-201ENST00000399292 THOC2Q8NI27 1593 aaKnown RBP21.45■■□□□ 1.02
SMIM11A-201ENST00000399292 CCDC88BA6NC98 1476 aa21.41■■□□□ 1.02
SMIM11A-201ENST00000399292 FANCD2Q9BXW9 1451 aa21.39■■□□□ 1.02
SMIM11A-201ENST00000399292 MRC2Q9UBG0 1479 aa21.38■■□□□ 1.01
SMIM11A-201ENST00000399292 CEP164Q9UPV0 1460 aa21.38■■□□□ 1.01
SMIM11A-201ENST00000399292 OSCARQ8IYS5 282 aa21.29■■□□□ 1
SMIM11A-201ENST00000399292 WDR62O43379 1518 aa21.29■■□□□ 1
SMIM11A-201ENST00000399292 AKT1S1Q96B36 256 aa21.25■□□□□ 0.99
SMIM11A-201ENST00000399292 SUPT5HO00267 1087 aaKnown RBP21.21■□□□□ 0.99
SMIM11A-201ENST00000399292 CSRNP3Q8WYN3 585 aa21.18■□□□□ 0.98
SMIM11A-201ENST00000399292 CHRDL2Q6WN34 429 aa21.17■□□□□ 0.98
SMIM11A-201ENST00000399292 URB2Q14146 1524 aaKnown RBP21.17■□□□□ 0.98
SMIM11A-201ENST00000399292 FBLN2P98095 1184 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms