Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.63□□□□□ -0.39
RFC3P40938 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 PES1P2-201ENST00000449745 1735 ntBASIC12.63□□□□□ -0.39
RFC3P40938 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 LRP8-203ENST00000354412 2553 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 DYNC1I2-203ENST00000409197 2572 ntAPPRIS P4 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 DYNC1I2-206ENST00000409773 2583 ntTSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 OR2W2P-201ENST00000406313 909 ntBASIC12.63□□□□□ -0.39
RFC3P40938 MIR1307-201ENST00000408840 149 ntBASIC12.63□□□□□ -0.39
RFC3P40938 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 EEF1DP2-201ENST00000433698 843 ntBASIC12.63□□□□□ -0.39
RFC3P40938 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.63□□□□□ -0.39
RFC3P40938 PRRC2B-207ENST00000458550 899 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 AC025186.1-201ENST00000478174 870 ntBASIC12.63□□□□□ -0.39
RFC3P40938 REEP5-205ENST00000504247 480 ntTSL 5 BASIC12.63□□□□□ -0.39
RFC3P40938 AC093826.1-201ENST00000508655 993 ntBASIC12.63□□□□□ -0.39
RFC3P40938 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC12.63□□□□□ -0.39
RFC3P40938 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC12.63□□□□□ -0.39
RFC3P40938 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
RFC3P40938 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC12.63□□□□□ -0.39
RFC3P40938 AC061965.1-201ENST00000560524 1465 ntBASIC12.63□□□□□ -0.39
RFC3P40938 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
RFC3P40938 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.63□□□□□ -0.39
RFC3P40938 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.63□□□□□ -0.39
RFC3P40938 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RFC3P40938 ITGB3-201ENST00000559488 3995 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 CIPC-201ENST00000361786 4486 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
RFC3P40938 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC12.62□□□□□ -0.39
RFC3P40938 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
RFC3P40938 SH2D3C-201ENST00000314830 3124 ntAPPRIS P4 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 MYO9A-202ENST00000424560 4008 ntTSL 5 BASIC12.62□□□□□ -0.39
RFC3P40938 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
RFC3P40938 SLC35D1-201ENST00000235345 6162 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
RFC3P40938 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.62□□□□□ -0.39
RFC3P40938 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.62□□□□□ -0.39
RFC3P40938 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
RFC3P40938 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC12.62□□□□□ -0.39
RFC3P40938 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
RFC3P40938 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC12.62□□□□□ -0.39
RFC3P40938 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RFC3P40938 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC12.62□□□□□ -0.39
RFC3P40938 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
RFC3P40938 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC12.62□□□□□ -0.39
RFC3P40938 AC013553.1-201ENST00000560906 267 ntBASIC12.62□□□□□ -0.39
RFC3P40938 C2orf69P1-201ENST00000563532 1093 ntBASIC12.62□□□□□ -0.39
RFC3P40938 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC12.62□□□□□ -0.39
RFC3P40938 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC12.62□□□□□ -0.39
RFC3P40938 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC12.62□□□□□ -0.39
RFC3P40938 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
RFC3P40938 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC12.62□□□□□ -0.39
RFC3P40938 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
RFC3P40938 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms