Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC15.61■□□□□ 0.09
SMARCA1P28370 CR383656.13-201ENST00000550928 563 ntTSL 3 BASIC15.61■□□□□ 0.09
SMARCA1P28370 AL512310.10-201ENST00000555580 563 ntTSL 3 BASIC15.61■□□□□ 0.09
SMARCA1P28370 AC141586.1-203ENST00000567242 366 ntBASIC15.61■□□□□ 0.09
SMARCA1P28370 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC15.61■□□□□ 0.09
SMARCA1P28370 AC006483.2-201ENST00000609813 515 ntBASIC15.61■□□□□ 0.09
SMARCA1P28370 AC113385.2-201ENST00000614465 762 ntBASIC15.61■□□□□ 0.09
SMARCA1P28370 LINC00643-207ENST00000637212 734 ntBASIC15.61■□□□□ 0.09
SMARCA1P28370 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SMARCA1P28370 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
SMARCA1P28370 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SMARCA1P28370 RBM22P2-201ENST00000393978 1814 ntBASIC15.61■□□□□ 0.09
SMARCA1P28370 PXK-210ENST00000479241 2817 ntTSL 2 BASIC15.61■□□□□ 0.09
SMARCA1P28370 EGLN3-205ENST00000547327 2849 ntBASIC15.61■□□□□ 0.09
SMARCA1P28370 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SMARCA1P28370 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SMARCA1P28370 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SMARCA1P28370 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 ZNF595-203ENST00000608255 1999 ntTSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 AP000437.1-201ENST00000624057 2085 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 DRD3-201ENST00000295881 1541 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 NIN-202ENST00000324330 4364 ntTSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 RNA5SP491-201ENST00000362936 118 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC15.6■□□□□ 0.09
SMARCA1P28370 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC15.6■□□□□ 0.09
SMARCA1P28370 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 MTHFD2P7-201ENST00000483867 983 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 AC093909.3-201ENST00000504783 336 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 SLC25A51P3-201ENST00000521814 889 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 IGHVII-33-1-201ENST00000524010 280 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 AL137779.3-201ENST00000553295 729 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 AC026304.1-201ENST00000597953 561 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 AL590094.1-208ENST00000636917 627 ntTSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 CHMP4C-201ENST00000297265 1866 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 NDUFAF6-201ENST00000396111 1869 ntTSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SMARCA1P28370 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC15.6■□□□□ 0.09
SMARCA1P28370 ELMOD3-201ENST00000315658 2685 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SMARCA1P28370 AC012358.2-201ENST00000430010 1434 ntBASIC15.6■□□□□ 0.09
SMARCA1P28370 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 VDAC2-202ENST00000313132 1467 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 TP73-207ENST00000378290 1831 ntTSL 2 BASIC15.59■□□□□ 0.09
SMARCA1P28370 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 ARHGEF26-202ENST00000465093 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
SMARCA1P28370 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC15.59■□□□□ 0.09
SMARCA1P28370 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
SMARCA1P28370 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 TNNI2-201ENST00000252898 678 ntAPPRIS P3 TSL 3 BASIC15.59■□□□□ 0.09
SMARCA1P28370 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 MRPL33-201ENST00000296102 518 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
SMARCA1P28370 TPI1P3-201ENST00000335020 740 ntBASIC15.59■□□□□ 0.09
SMARCA1P28370 LMO1-201ENST00000335790 1279 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 MRPL33-202ENST00000379666 404 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 TNNI2-202ENST00000381905 706 ntAPPRIS ALT1 TSL 3 BASIC15.59■□□□□ 0.09
SMARCA1P28370 TNNI2-203ENST00000381906 745 ntAPPRIS P3 TSL 3 BASIC15.59■□□□□ 0.09
SMARCA1P28370 TNNI2-204ENST00000381911 743 ntAPPRIS P3 TSL 2 BASIC15.59■□□□□ 0.09
SMARCA1P28370 SDCBP2P1-201ENST00000416115 614 ntBASIC15.59■□□□□ 0.09
SMARCA1P28370 CD37-203ENST00000426897 1204 ntTSL 2 BASIC15.59■□□□□ 0.09
SMARCA1P28370 PGK1P2-201ENST00000431702 1214 ntBASIC15.59■□□□□ 0.09
SMARCA1P28370 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
SMARCA1P28370 RN7SL494P-201ENST00000461517 304 ntBASIC15.59■□□□□ 0.09
SMARCA1P28370 RN7SL818P-201ENST00000485099 259 ntBASIC15.59■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms