Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 MARK2P9-201ENST00000430958 1727 ntBASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AL031587.5-201ENST00000624344 1849 ntBASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
SHROOM1Q2M3G4 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 GOSR2-233ENST00000640068 3103 ntTSL 5 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 LINC01658-201ENST00000320372 1578 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 TUBB2A-201ENST00000333628 1595 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 AIG1-203ENST00000367596 559 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 COLQ-202ENST00000383786 1482 ntTSL 5 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 DAXX-203ENST00000414083 2355 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 AC016582.2-202ENST00000587765 1094 ntBASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 FAM90A28P-201ENST00000596881 489 ntTSL 5 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 GPN1-211ENST00000610189 1778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 AC099063.4-201ENST00000641099 1602 ntBASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC15.81■□□□□ 0.12
SHROOM1Q2M3G4 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC004623.1-201ENST00000624592 2127 ntBASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC108024.1-201ENST00000626286 1721 ntBASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 APEX1-201ENST00000216714 1484 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 KRT18P33-201ENST00000398525 1043 ntBASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC004895.1-203ENST00000428901 540 ntTSL 4 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC004895.1-202ENST00000435547 547 ntTSL 5 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 CMPK1-204ENST00000450808 950 ntTSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC147876.1-201ENST00000504408 322 ntBASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC073896.4-201ENST00000553176 403 ntTSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 EMC4-208ENST00000559078 599 ntTSL 3 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 GNG14-201ENST00000640117 210 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
SHROOM1Q2M3G4 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms