Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 ESRRB-201ENST00000380887 2745 ntTSL 5 BASIC15.51■□□□□ 0.07
TPM4P67936 AC022400.8-201ENST00000623453 3599 ntBASIC15.51■□□□□ 0.07
TPM4P67936 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC15.51■□□□□ 0.07
TPM4P67936 KRT43P-201ENST00000434019 910 ntBASIC15.51■□□□□ 0.07
TPM4P67936 KRT17P7-201ENST00000451704 1104 ntBASIC15.51■□□□□ 0.07
TPM4P67936 EIF4HP1-201ENST00000453115 687 ntBASIC15.51■□□□□ 0.07
TPM4P67936 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC15.51■□□□□ 0.07
TPM4P67936 ZNF701-204ENST00000540331 5538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 AC008735.3-201ENST00000596646 500 ntBASIC15.51■□□□□ 0.07
TPM4P67936 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.51■□□□□ 0.07
TPM4P67936 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.51■□□□□ 0.07
TPM4P67936 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC15.51■□□□□ 0.07
TPM4P67936 LHCGR-201ENST00000294954 3044 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 PLB1-205ENST00000422425 5115 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 PNPLA7-202ENST00000406427 4806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 TSC22D1-203ENST00000458659 4820 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TPM4P67936 KIF13A-201ENST00000259711 5941 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 DRD3-202ENST00000383673 1640 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TPM4P67936 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 PPP1R10-201ENST00000376511 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 PDE9A-201ENST00000291539 2058 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 B3GAT2-202ENST00000615536 5206 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TPM4P67936 TNRC6C-211ENST00000636222 7093 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TPM4P67936 NUDT9-203ENST00000473942 2458 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TPM4P67936 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 AC079178.1-201ENST00000420915 656 ntBASIC15.5■□□□□ 0.07
TPM4P67936 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM4P67936 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC15.5■□□□□ 0.07
TPM4P67936 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC15.5■□□□□ 0.07
TPM4P67936 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM4P67936 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.5■□□□□ 0.07
TPM4P67936 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TPM4P67936 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM4P67936 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC15.5■□□□□ 0.07
TPM4P67936 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.5■□□□□ 0.07
TPM4P67936 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC15.5■□□□□ 0.07
TPM4P67936 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.5■□□□□ 0.07
TPM4P67936 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.5■□□□□ 0.07
TPM4P67936 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.5■□□□□ 0.07
TPM4P67936 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC15.5■□□□□ 0.07
TPM4P67936 AF013593.1-201ENST00000458074 1487 ntBASIC15.5■□□□□ 0.07
TPM4P67936 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM4P67936 LAS1L-202ENST00000374807 2386 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 HSPA12A-201ENST00000369209 5722 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 IL9RP3-201ENST00000442856 1674 ntBASIC15.5■□□□□ 0.07
TPM4P67936 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM4P67936 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TPM4P67936 DIO1-216ENST00000613679 1856 ntAPPRIS ALT1 TSL 5 BASIC15.5■□□□□ 0.07
TPM4P67936 PCDHGA8-202ENST00000610569 6480 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
TPM4P67936 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 BAIAP2-AS1-202ENST00000577066 4465 ntTSL 2 BASIC15.5■□□□□ 0.07
TPM4P67936 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 ARSG-201ENST00000448504 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 NMNAT2-201ENST00000287713 5663 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TPM4P67936 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC15.49■□□□□ 0.07
TPM4P67936 MAML3-203ENST00000509479 6844 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC15.49■□□□□ 0.07
TPM4P67936 TG-201ENST00000220616 8450 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 RASA4CP-203ENST00000446874 3193 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 RALGAPB-203ENST00000397042 8652 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 NR1H3-201ENST00000395397 1501 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC15.49■□□□□ 0.07
TPM4P67936 PLCXD1-201ENST00000381657 5507 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
TPM4P67936 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC15.49■□□□□ 0.07
TPM4P67936 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 AKNA-201ENST00000223791 4414 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
TPM4P67936 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TPM4P67936 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC15.49■□□□□ 0.07
TPM4P67936 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms