Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 YWHAEP7-202ENST00000620903 2455 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 BCL2L11-217ENST00000610735 5120 ntTSL 5 BASIC13.07□□□□□ -0.32
CLK1P49759 TLK1-202ENST00000360843 5726 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 KCNAB2-202ENST00000341524 4207 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 GNPNAT1-201ENST00000216410 3860 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 AC060814.4-201ENST00000594169 2163 ntBASIC13.07□□□□□ -0.32
CLK1P49759 C9orf106-201ENST00000316786 3145 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 AL133387.2-201ENST00000422661 2222 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 CREBL2-201ENST00000228865 3754 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 REST-208ENST00000619101 7114 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC13.07□□□□□ -0.32
CLK1P49759 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 AC006122.1-201ENST00000493323 440 ntBASIC13.07□□□□□ -0.32
CLK1P49759 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.07□□□□□ -0.32
CLK1P49759 AC126915.1-201ENST00000522847 1038 ntBASIC13.07□□□□□ -0.32
CLK1P49759 AC003686.1-201ENST00000550956 1034 ntBASIC13.07□□□□□ -0.32
CLK1P49759 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC13.07□□□□□ -0.32
CLK1P49759 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 AC140658.4-201ENST00000561990 352 ntBASIC13.07□□□□□ -0.32
CLK1P49759 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC13.07□□□□□ -0.32
CLK1P49759 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.07□□□□□ -0.32
CLK1P49759 AC124068.2-201ENST00000569473 1109 ntBASIC13.07□□□□□ -0.32
CLK1P49759 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 AC005962.1-201ENST00000584100 773 ntBASIC13.07□□□□□ -0.32
CLK1P49759 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.07□□□□□ -0.32
CLK1P49759 AC090386.2-201ENST00000623010 1039 ntBASIC13.07□□□□□ -0.32
CLK1P49759 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.07□□□□□ -0.32
CLK1P49759 AC004923.1-202ENST00000642106 209 ntBASIC13.07□□□□□ -0.32
CLK1P49759 TBX3-201ENST00000257566 4208 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 HPX-201ENST00000265983 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 MYRIP-201ENST00000302541 5077 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 AHI1-205ENST00000457866 5549 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC13.07□□□□□ -0.32
CLK1P49759 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 ATP13A2-203ENST00000452699 3981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 SLX4-201ENST00000294008 7307 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CLK1P49759 OFD1-201ENST00000340096 3611 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CLK1P49759 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
CLK1P49759 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 ASB3-204ENST00000406687 2205 ntTSL 2 BASIC13.07□□□□□ -0.32
CLK1P49759 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 SKA3-202ENST00000314759 2919 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 EPM2AIP1-201ENST00000322716 8126 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
CLK1P49759 SLC44A3-AS1-215ENST00000634870 5956 ntTSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 ATG5-202ENST00000360666 2712 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 GSTM4-204ENST00000369836 1412 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 PRICKLE1-203ENST00000455697 4277 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 FGFR1-211ENST00000425967 5375 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 TCAF2-201ENST00000357344 2958 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 DNMT1-201ENST00000340748 5408 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 POM121L9P-201ENST00000414583 5018 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 SLC35A4-201ENST00000323146 3041 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CLK1P49759 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC13.06□□□□□ -0.32
CLK1P49759 KRTAP10-13P-201ENST00000412914 571 ntBASIC13.06□□□□□ -0.32
CLK1P49759 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC13.06□□□□□ -0.32
CLK1P49759 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 RPL18P13-201ENST00000478088 569 ntBASIC13.06□□□□□ -0.32
CLK1P49759 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 HLA-J-204ENST00000495278 958 ntBASIC13.06□□□□□ -0.32
CLK1P49759 AC106794.1-201ENST00000506935 792 ntBASIC13.06□□□□□ -0.32
CLK1P49759 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.06□□□□□ -0.32
CLK1P49759 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.06□□□□□ -0.32
CLK1P49759 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms