Protein–RNA interactions for Protein: Q9Y4M8

LINC00588, Putative uncharacterized protein encoded by LINC00588, humanhuman

Predictions only

Length 146 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00588Q9Y4M8 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC15.32■□□□□ 0.04
LINC00588Q9Y4M8 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LINC00588Q9Y4M8 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
LINC00588Q9Y4M8 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
LINC00588Q9Y4M8 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC15.32■□□□□ 0.04
LINC00588Q9Y4M8 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 SLC47A1P1-202ENST00000449666 945 ntBASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 AC126544.1-201ENST00000580842 1059 ntBASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 MPST-208ENST00000628507 698 ntTSL 5 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 AC079630.1-202ENST00000618127 1840 ntBASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
LINC00588Q9Y4M8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC15.3■□□□□ 0.04
LINC00588Q9Y4M8 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC15.29■□□□□ 0.04
LINC00588Q9Y4M8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
LINC00588Q9Y4M8 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 IRS3P-201ENST00000223076 1006 ntBASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 RARRES2P6-201ENST00000567333 442 ntBASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
LINC00588Q9Y4M8 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
LINC00588Q9Y4M8 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
LINC00588Q9Y4M8 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
LINC00588Q9Y4M8 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00588Q9Y4M8 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC15.26■□□□□ 0.03
LINC00588Q9Y4M8 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00588Q9Y4M8 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
LINC00588Q9Y4M8 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms