Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
AMBRA1Q9C0C7 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
AMBRA1Q9C0C7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC20.86■□□□□ 0.93
AMBRA1Q9C0C7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.85■□□□□ 0.93
AMBRA1Q9C0C7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.84■□□□□ 0.93
AMBRA1Q9C0C7 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
AMBRA1Q9C0C7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
AMBRA1Q9C0C7 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC20.84■□□□□ 0.93
AMBRA1Q9C0C7 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.84■□□□□ 0.93
AMBRA1Q9C0C7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.84■□□□□ 0.93
AMBRA1Q9C0C7 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
AMBRA1Q9C0C7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
AMBRA1Q9C0C7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
AMBRA1Q9C0C7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
AMBRA1Q9C0C7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.83■□□□□ 0.93
AMBRA1Q9C0C7 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
AMBRA1Q9C0C7 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
AMBRA1Q9C0C7 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
AMBRA1Q9C0C7 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
AMBRA1Q9C0C7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.83■□□□□ 0.92
AMBRA1Q9C0C7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
AMBRA1Q9C0C7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
AMBRA1Q9C0C7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
AMBRA1Q9C0C7 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
AMBRA1Q9C0C7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
AMBRA1Q9C0C7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
AMBRA1Q9C0C7 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 AC079630.1-202ENST00000618127 1840 ntBASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 YBX1P4-201ENST00000392794 808 ntBASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 AC120024.1-201ENST00000562672 995 ntBASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
AMBRA1Q9C0C7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
AMBRA1Q9C0C7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
AMBRA1Q9C0C7 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.8■□□□□ 0.92
AMBRA1Q9C0C7 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
AMBRA1Q9C0C7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.8■□□□□ 0.92
AMBRA1Q9C0C7 AF131216.4-201ENST00000638924 1588 ntBASIC20.8■□□□□ 0.92
AMBRA1Q9C0C7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 KRT8P33-201ENST00000508125 1423 ntBASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
AMBRA1Q9C0C7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
AMBRA1Q9C0C7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.78■□□□□ 0.92
AMBRA1Q9C0C7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.78■□□□□ 0.92
AMBRA1Q9C0C7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.78■□□□□ 0.92
AMBRA1Q9C0C7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.78■□□□□ 0.92
AMBRA1Q9C0C7 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms