Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 LINC00526-201ENST00000581067 1875 ntBASIC16.67■□□□□ 0.26
LINC00477Q96M19 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC16.67■□□□□ 0.26
LINC00477Q96M19 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC16.67■□□□□ 0.26
LINC00477Q96M19 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC16.66■□□□□ 0.26
LINC00477Q96M19 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LINC00477Q96M19 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC16.66■□□□□ 0.26
LINC00477Q96M19 AC127496.7-201ENST00000625110 1798 ntBASIC16.66■□□□□ 0.26
LINC00477Q96M19 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LINC00477Q96M19 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC16.66■□□□□ 0.26
LINC00477Q96M19 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
LINC00477Q96M19 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
LINC00477Q96M19 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LINC00477Q96M19 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
LINC00477Q96M19 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
LINC00477Q96M19 SNX5-217ENST00000606557 1087 ntBASIC16.66■□□□□ 0.26
LINC00477Q96M19 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
LINC00477Q96M19 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LINC00477Q96M19 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
LINC00477Q96M19 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LINC00477Q96M19 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LINC00477Q96M19 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LINC00477Q96M19 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
LINC00477Q96M19 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LINC00477Q96M19 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LINC00477Q96M19 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 AC137630.3-201ENST00000607245 391 ntBASIC16.65■□□□□ 0.26
LINC00477Q96M19 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
LINC00477Q96M19 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
LINC00477Q96M19 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
LINC00477Q96M19 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
LINC00477Q96M19 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC16.64■□□□□ 0.25
LINC00477Q96M19 AC144652.1-201ENST00000609974 1624 ntBASIC16.64■□□□□ 0.25
LINC00477Q96M19 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 AC242852.2-201ENST00000615738 1807 ntBASIC16.64■□□□□ 0.25
LINC00477Q96M19 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
LINC00477Q96M19 TK2-216ENST00000564917 1156 ntTSL 3 BASIC16.64■□□□□ 0.25
LINC00477Q96M19 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC16.64■□□□□ 0.25
LINC00477Q96M19 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
LINC00477Q96M19 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
LINC00477Q96M19 EP400NL-214ENST00000641289 2402 ntBASIC16.64■□□□□ 0.25
LINC00477Q96M19 COMT-203ENST00000403184 2217 ntTSL 2 BASIC16.64■□□□□ 0.25
LINC00477Q96M19 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC16.63■□□□□ 0.25
LINC00477Q96M19 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 AC103834.1-201ENST00000520383 144 ntBASIC16.63■□□□□ 0.25
LINC00477Q96M19 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
LINC00477Q96M19 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC16.63■□□□□ 0.25
LINC00477Q96M19 AL033527.3-201ENST00000566366 1196 ntBASIC16.63■□□□□ 0.25
LINC00477Q96M19 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC16.63■□□□□ 0.25
LINC00477Q96M19 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
LINC00477Q96M19 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC16.63■□□□□ 0.25
LINC00477Q96M19 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LINC00477Q96M19 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LINC00477Q96M19 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 AC103724.3-201ENST00000564481 992 ntBASIC16.62■□□□□ 0.25
LINC00477Q96M19 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LINC00477Q96M19 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LINC00477Q96M19 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LINC00477Q96M19 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LINC00477Q96M19 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LINC00477Q96M19 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
LINC00477Q96M19 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC16.61■□□□□ 0.25
LINC00477Q96M19 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms