Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NKX2-3Q8TAU0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC26.57■■□□□ 1.84
NKX2-3Q8TAU0 RARRES2P11-201ENST00000635158 484 ntBASIC26.57■■□□□ 1.84
NKX2-3Q8TAU0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NKX2-3Q8TAU0 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
NKX2-3Q8TAU0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 AC090192.1-201ENST00000517740 490 ntBASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 SF1-220ENST00000626028 704 ntTSL 2 BASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NKX2-3Q8TAU0 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
NKX2-3Q8TAU0 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC26.55■■□□□ 1.84
NKX2-3Q8TAU0 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
NKX2-3Q8TAU0 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
NKX2-3Q8TAU0 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC26.55■■□□□ 1.84
NKX2-3Q8TAU0 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC26.55■■□□□ 1.84
NKX2-3Q8TAU0 ANOS2P-203ENST00000472227 1816 ntBASIC26.55■■□□□ 1.84
NKX2-3Q8TAU0 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 AC099791.2-201ENST00000605725 427 ntBASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC26.54■■□□□ 1.84
NKX2-3Q8TAU0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 VGF-203ENST00000611537 1622 ntTSL 5 BASIC26.53■■□□□ 1.84
NKX2-3Q8TAU0 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NKX2-3Q8TAU0 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NKX2-3Q8TAU0 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC26.52■■□□□ 1.84
NKX2-3Q8TAU0 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NKX2-3Q8TAU0 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC26.52■■□□□ 1.84
NKX2-3Q8TAU0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NKX2-3Q8TAU0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC26.52■■□□□ 1.84
NKX2-3Q8TAU0 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
NKX2-3Q8TAU0 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC26.51■■□□□ 1.84
NKX2-3Q8TAU0 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
NKX2-3Q8TAU0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NKX2-3Q8TAU0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 GTSE1-AS1-202ENST00000623117 1518 ntBASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.5■■□□□ 1.83
NKX2-3Q8TAU0 RASA4CP-201ENST00000424092 1398 ntBASIC26.49■■□□□ 1.83
NKX2-3Q8TAU0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC26.49■■□□□ 1.83
NKX2-3Q8TAU0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC26.49■■□□□ 1.83
NKX2-3Q8TAU0 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC26.49■■□□□ 1.83
NKX2-3Q8TAU0 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NKX2-3Q8TAU0 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
NKX2-3Q8TAU0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NKX2-3Q8TAU0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC26.48■■□□□ 1.83
NKX2-3Q8TAU0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
NKX2-3Q8TAU0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC26.48■■□□□ 1.83
NKX2-3Q8TAU0 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC26.48■■□□□ 1.83
NKX2-3Q8TAU0 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NKX2-3Q8TAU0 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
NKX2-3Q8TAU0 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 CA15P2-201ENST00000611168 834 ntBASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.47■■□□□ 1.83
NKX2-3Q8TAU0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
NKX2-3Q8TAU0 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC26.46■■□□□ 1.83
NKX2-3Q8TAU0 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC26.46■■□□□ 1.83
NKX2-3Q8TAU0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC26.46■■□□□ 1.83
NKX2-3Q8TAU0 AC092171.4-201ENST00000609130 632 ntBASIC26.46■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms