Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LINC00346Q8IVM7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC19.72■□□□□ 0.75
LINC00346Q8IVM7 AC005703.6-201ENST00000623265 1329 ntBASIC19.72■□□□□ 0.75
LINC00346Q8IVM7 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LINC00346Q8IVM7 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.72■□□□□ 0.75
LINC00346Q8IVM7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LINC00346Q8IVM7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.72■□□□□ 0.75
LINC00346Q8IVM7 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LINC00346Q8IVM7 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LINC00346Q8IVM7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LINC00346Q8IVM7 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
LINC00346Q8IVM7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
LINC00346Q8IVM7 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
LINC00346Q8IVM7 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
LINC00346Q8IVM7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 AC239859.2-201ENST00000444165 318 ntBASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 MIR4787-201ENST00000607364 84 ntBASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
LINC00346Q8IVM7 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 AL117328.2-201ENST00000624617 1940 ntBASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 AC009299.2-201ENST00000482477 511 ntBASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 Z92544.1-202ENST00000571933 1220 ntBASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 AL451085.2-201ENST00000605085 799 ntBASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
LINC00346Q8IVM7 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 MTDHP2-201ENST00000601468 714 ntBASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 AC144652.1-201ENST00000609974 1624 ntBASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
LINC00346Q8IVM7 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
LINC00346Q8IVM7 AC079834.2-201ENST00000609776 1949 ntBASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 TSPY9P-201ENST00000440215 945 ntBASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 TSPY11P-201ENST00000442607 1045 ntBASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
LINC00346Q8IVM7 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
LINC00346Q8IVM7 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
LINC00346Q8IVM7 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.74
LINC00346Q8IVM7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.64■□□□□ 0.73
LINC00346Q8IVM7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms