Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNFT1Q5M7Z0 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNFT1Q5M7Z0 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.22■□□□□ 0.83
RNFT1Q5M7Z0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RNFT1Q5M7Z0 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNFT1Q5M7Z0 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
RNFT1Q5M7Z0 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RNFT1Q5M7Z0 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 LINC01529-204ENST00000636474 1715 ntBASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.21■□□□□ 0.83
RNFT1Q5M7Z0 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 AL139125.2-201ENST00000623134 1869 ntBASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RNFT1Q5M7Z0 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 IGHV3-19-201ENST00000521488 291 ntBASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNFT1Q5M7Z0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
RNFT1Q5M7Z0 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 AL031602.1-201ENST00000633169 911 ntBASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.17■□□□□ 0.82
RNFT1Q5M7Z0 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 OR2I1P-207ENST00000453522 948 ntBASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RNFT1Q5M7Z0 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RNFT1Q5M7Z0 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 MIR572-201ENST00000384983 95 ntBASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.14■□□□□ 0.81
RNFT1Q5M7Z0 MIR6084-201ENST00000622012 110 ntBASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms