Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 SEPT2-206ENST00000402092 3333 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.487e-6■■■■□ 20
U2AF1Q01081 QKI-211ENST00000540719 588 ntTSL 211.78□□□□□ -0.527e-6■■■■□ 20
U2AF1Q01081 SEPT2-219ENST00000441533 372 ntTSL 511.48□□□□□ -0.577e-6■■■■□ 20
U2AF1Q01081 LRCH3-219ENST00000494069 783 ntTSL 511.46□□□□□ -0.577e-6■■■■□ 20
U2AF1Q01081 PTPRA-204ENST00000380393 3636 ntTSL 1 (best) BASIC10.9□□□□□ -0.667e-6■■■■□ 20
U2AF1Q01081 CEP85-206ENST00000476272 3507 ntTSL 210.85□□□□□ -0.677e-6■■■■□ 20
U2AF1Q01081 SEPT2-221ENST00000445030 575 ntTSL 310.18□□□□□ -0.787e-6■■■■□ 20
U2AF1Q01081 SEPT2-207ENST00000407017 650 ntTSL 410.18□□□□□ -0.787e-6■■■■□ 20
U2AF1Q01081 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC9.54□□□□□ -0.887e-6■■■■□ 20
U2AF1Q01081 SEL1L3-204ENST00000507618 429 ntTSL 59.53□□□□□ -0.889e-16■■■■□ 20
U2AF1Q01081 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC8.65□□□□□ -1.027e-6■■■■□ 20
U2AF1Q01081 RCOR3-213ENST00000529763 720 ntTSL 58.51□□□□□ -1.057e-6■■■■□ 20
U2AF1Q01081 SEPT2-220ENST00000443492 558 ntTSL 57.8□□□□□ -1.167e-6■■■■□ 20
U2AF1Q01081 SEPT2-241ENST00000484740 563 ntTSL 37.79□□□□□ -1.167e-6■■■■□ 20
U2AF1Q01081 PID1-205ENST00000482518 479 ntTSL 27.16□□□□□ -1.261e-10■■■■□ 20
U2AF1Q01081 STEAP1B-204ENST00000439708 797 ntTSL 36.99□□□□□ -1.297e-6■■■■□ 20
U2AF1Q01081 AC112178.1-202ENST00000446720 427 ntTSL 36.7□□□□□ -1.347e-6■■■■□ 20
U2AF1Q01081 SEPT2-228ENST00000464128 565 ntTSL 46.38□□□□□ -1.397e-6■■■■□ 20
U2AF1Q01081 RCOR3-215ENST00000534460 427 ntTSL 35.95□□□□□ -1.467e-6■■■■□ 20
U2AF1Q01081 RCOR3-207ENST00000486666 4086 ntTSL 25.83□□□□□ -1.487e-6■■■■□ 20
U2AF1Q01081 RCOR3-206ENST00000485186 434 ntTSL 35.82□□□□□ -1.487e-6■■■■□ 20
U2AF1Q01081 SEPT2-232ENST00000469434 583 ntTSL 35.55□□□□□ -1.527e-6■■■■□ 20
U2AF1Q01081 SEL1L3-205ENST00000509290 560 ntTSL 25.48□□□□□ -1.539e-16■■■■□ 20
U2AF1Q01081 SEPT2-233ENST00000473479 659 ntTSL 24.71□□□□□ -1.667e-6■■■■□ 20
U2AF1Q01081 QKI-215ENST00000544823 597 ntTSL 24.34□□□□□ -1.717e-6■■■■□ 20
U2AF1Q01081 FUS-203ENST00000474990 827 ntTSL 330.34■■■□□ 2.451e-57■■■■□ 20
U2AF1Q01081 FUS-211ENST00000568901 521 ntTSL 214.01□□□□□ -0.171e-57■■■■□ 20
U2AF1Q01081 UBE2B-203ENST00000503080 657 ntTSL 25.15□□□□□ -1.591e-6■■■■□ 19.9
U2AF1Q01081 UBE2B-202ENST00000499038 682 ntTSL 35.04□□□□□ -1.61e-6■■■■□ 19.9
U2AF1Q01081 DDX41-202ENST00000503078 2375 ntTSL 231.17■■■□□ 2.583e-7■■■■□ 19.9
U2AF1Q01081 DDX41-217ENST00000515562 1184 ntTSL 1 (best)23.38■■□□□ 1.333e-7■■■■□ 19.9
U2AF1Q01081 DDX41-201ENST00000330503 2137 ntTSL 1 (best)22.35■■□□□ 1.173e-7■■■■□ 19.9
U2AF1Q01081 DDX41-205ENST00000505081 2949 ntTSL 220.61■□□□□ 0.893e-7■■■■□ 19.9
U2AF1Q01081 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.623e-7■■■■□ 19.9
U2AF1Q01081 DDX41-212ENST00000511040 721 ntTSL 318.73■□□□□ 0.593e-7■■■■□ 19.9
U2AF1Q01081 DDX41-210ENST00000509576 819 ntTSL 317.94■□□□□ 0.463e-7■■■■□ 19.9
U2AF1Q01081 DDX41-206ENST00000506965 560 ntTSL 517.94■□□□□ 0.463e-7■■■■□ 19.9
U2AF1Q01081 DDX41-215ENST00000512431 904 ntTSL 516.71■□□□□ 0.273e-7■■■■□ 19.9
U2AF1Q01081 DDX41-219ENST00000629036 606 ntTSL 4 BASIC14.88□□□□□ -0.033e-7■■■■□ 19.9
U2AF1Q01081 DDX41-203ENST00000504781 618 ntTSL 313.42□□□□□ -0.263e-7■■■■□ 19.9
U2AF1Q01081 DDX41-209ENST00000508279 776 ntTSL 512.58□□□□□ -0.43e-7■■■■□ 19.9
U2AF1Q01081 KMT2E-214ENST00000495267 1133 ntTSL 1 (best)26.99■■□□□ 1.911e-6■■■■□ 19.9
U2AF1Q01081 KMT2E-211ENST00000480368 679 ntTSL 526.23■■□□□ 1.791e-6■■■■□ 19.9
U2AF1Q01081 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC23.66■■□□□ 1.381e-6■■■■□ 19.9
U2AF1Q01081 KMT2E-209ENST00000478990 1500 ntTSL 522.58■■□□□ 1.211e-6■■■■□ 19.9
U2AF1Q01081 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.631e-6■■■■□ 19.9
U2AF1Q01081 KMT2E-203ENST00000334884 6840 ntTSL 518.96■□□□□ 0.631e-6■■■■□ 19.9
U2AF1Q01081 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.551e-6■■■■□ 19.9
U2AF1Q01081 KMT2E-206ENST00000474203 617 ntTSL 311.9□□□□□ -0.51e-6■■■■□ 19.9
U2AF1Q01081 KMT2E-212ENST00000482560 1759 ntTSL 58.07□□□□□ -1.121e-6■■■■□ 19.9
U2AF1Q01081 CLCN3-209ENST00000513761 6692 ntAPPRIS ALT1 TSL 1 (best) BASIC9.84□□□□□ -0.838e-8■■■■□ 19.8
U2AF1Q01081 CLCN3-202ENST00000360642 3208 ntTSL 2 BASIC9.33□□□□□ -0.928e-8■■■■□ 19.8
U2AF1Q01081 CLCN3-206ENST00000507875 2485 ntTSL 28.99□□□□□ -0.978e-8■■■■□ 19.8
U2AF1Q01081 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC8.41□□□□□ -1.068e-8■■■■□ 19.8
U2AF1Q01081 CLCN3-207ENST00000511092 582 ntTSL 38.41□□□□□ -1.068e-8■■■■□ 19.8
U2AF1Q01081 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.85□□□□□ -1.158e-8■■■■□ 19.8
U2AF1Q01081 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC7.47□□□□□ -1.218e-8■■■■□ 19.8
U2AF1Q01081 ARF4-202ENST00000463880 641 ntTSL 327.79■■■□□ 2.044e-6■■■■□ 19.8
U2AF1Q01081 ABCC3-211ENST00000510891 715 ntTSL 522.07■■□□□ 1.128e-7■■■■□ 19.8
U2AF1Q01081 GPT2-204ENST00000562801 2092 ntTSL 220.22■□□□□ 0.834e-6■■■■□ 19.8
U2AF1Q01081 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.524e-6■■■■□ 19.8
U2AF1Q01081 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.434e-6■■■■□ 19.8
U2AF1Q01081 CTC1-203ENST00000578240 1653 ntTSL 217.44■□□□□ 0.381e-10■■■■□ 19.8
U2AF1Q01081 CTC1-205ENST00000578537 943 ntTSL 517.3■□□□□ 0.361e-10■■■■□ 19.8
U2AF1Q01081 ARF4-208ENST00000495354 495 ntTSL 316.21■□□□□ 0.194e-6■■■■□ 19.8
U2AF1Q01081 GPT2-202ENST00000440783 4228 ntTSL 2 BASIC16.07■□□□□ 0.164e-6■■■■□ 19.8
U2AF1Q01081 NAT10-202ENST00000527971 1600 ntTSL 2 BASIC15.88■□□□□ 0.134e-6■■■■□ 19.8
U2AF1Q01081 ARF4-207ENST00000493378 548 ntTSL 314.4□□□□□ -0.14e-6■■■■□ 19.8
U2AF1Q01081 DSP-202ENST00000418664 7812 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.164e-6■■■■□ 19.8
U2AF1Q01081 CTC1-202ENST00000449476 4797 ntTSL 213.34□□□□□ -0.271e-10■■■■□ 19.8
U2AF1Q01081 ENPP1-202ENST00000459624 1633 ntTSL 1 (best)13.14□□□□□ -0.314e-6■■■■□ 19.8
U2AF1Q01081 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.384e-6■■■■□ 19.8
U2AF1Q01081 CTC1-201ENST00000315684 7021 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.531e-10■■■■□ 19.8
U2AF1Q01081 NAT10-210ENST00000615292 3329 ntTSL 5 BASIC11.48□□□□□ -0.574e-6■■■■□ 19.8
U2AF1Q01081 NAT10-201ENST00000257829 4002 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.784e-6■■■■□ 19.8
U2AF1Q01081 NAT10-205ENST00000531159 3436 ntAPPRIS ALT2 TSL 2 BASIC9.91□□□□□ -0.824e-6■■■■□ 19.8
U2AF1Q01081 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC9.42□□□□□ -0.94e-6■■■■□ 19.8
U2AF1Q01081 ARF4-204ENST00000486310 1601 ntTSL 39.34□□□□□ -0.914e-6■■■■□ 19.8
U2AF1Q01081 ZFC3H1-205ENST00000547398 470 ntTSL 28.39□□□□□ -1.074e-6■■■■□ 19.8
U2AF1Q01081 FGL1-211ENST00000523097 913 ntTSL 26.05□□□□□ -1.444e-6■■■■□ 19.8
U2AF1Q01081 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.05□□□□□ -1.64e-6■■■■□ 19.8
U2AF1Q01081 FGL1-210ENST00000522636 773 ntTSL 24.52□□□□□ -1.694e-6■■■■□ 19.8
U2AF1Q01081 ARF4-203ENST00000483848 404 ntTSL 53.16□□□□□ -1.94e-6■■■■□ 19.8
U2AF1Q01081 COBLL1-219ENST00000491126 604 ntTSL 423.99■■□□□ 1.431e-6■■■■□ 19.8
U2AF1Q01081 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC23.41■■□□□ 1.341e-6■■■■□ 19.8
U2AF1Q01081 COBLL1-212ENST00000456171 1793 ntTSL 222.1■■□□□ 1.131e-6■■■■□ 19.8
U2AF1Q01081 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.361e-6■■■■□ 19.8
U2AF1Q01081 COBLL1-202ENST00000375458 9367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.171e-6■■■■□ 19.8
U2AF1Q01081 COBLL1-204ENST00000409184 4636 ntAPPRIS ALT2 TSL 1 (best)11.98□□□□□ -0.491e-6■■■■□ 19.8
U2AF1Q01081 COBLL1-221ENST00000493868 6332 ntTSL 1 (best)10.92□□□□□ -0.661e-6■■■■□ 19.8
U2AF1Q01081 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC10.22□□□□□ -0.771e-6■■■■□ 19.8
U2AF1Q01081 FANCA-202ENST00000389301 5451 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.12e-7■■■■□ 19.8
U2AF1Q01081 FANCA-230ENST00000568369 4601 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.252e-7■■■■□ 19.8
U2AF1Q01081 ITIH2-206ENST00000480387 573 ntTSL 310.83□□□□□ -0.687e-12■■■■□ 19.8
U2AF1Q01081 ITIH2-203ENST00000429820 767 ntTSL 310.48□□□□□ -0.737e-12■■■■□ 19.8
U2AF1Q01081 GTF2IP7-202ENST00000436677 309 ntBASIC5.61□□□□□ -1.512e-6■■■■□ 19.8
U2AF1Q01081 ITIH2-204ENST00000473227 654 ntTSL 24.85□□□□□ -1.637e-12■■■■□ 19.8
U2AF1Q01081 XPO6-223ENST00000574435 765 ntTSL 521.43■■□□□ 1.026e-17■■■■□ 19.8
U2AF1Q01081 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.696e-17■■■■□ 19.8
U2AF1Q01081 XPO6-202ENST00000561488 638 ntTSL 218.81■□□□□ 0.66e-17■■■■□ 19.8
Retrieved 100 of 10,096 protein–RNA pairs in 61.3 ms