Protein–RNA interactions for Protein: P56704

WNT3A, Protein Wnt-3a, humanhuman

Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
WNT3AP56704 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
WNT3AP56704 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
WNT3AP56704 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
WNT3AP56704 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
WNT3AP56704 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
WNT3AP56704 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.56■■□□□ 1.2
WNT3AP56704 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC22.56■■□□□ 1.2
WNT3AP56704 RASSF1-AS1-201ENST00000629828 790 ntBASIC22.56■■□□□ 1.2
WNT3AP56704 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.56■■□□□ 1.2
WNT3AP56704 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.56■■□□□ 1.2
WNT3AP56704 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
WNT3AP56704 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
WNT3AP56704 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
WNT3AP56704 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
WNT3AP56704 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
WNT3AP56704 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
WNT3AP56704 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.55■■□□□ 1.2
WNT3AP56704 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
WNT3AP56704 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
WNT3AP56704 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
WNT3AP56704 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.54■■□□□ 1.2
WNT3AP56704 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.54■■□□□ 1.2
WNT3AP56704 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.54■■□□□ 1.2
WNT3AP56704 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC22.54■■□□□ 1.2
WNT3AP56704 DUX4L4-201ENST00000566884 1269 ntBASIC22.54■■□□□ 1.2
WNT3AP56704 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.54■■□□□ 1.2
WNT3AP56704 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
WNT3AP56704 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
WNT3AP56704 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
WNT3AP56704 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.54■■□□□ 1.2
WNT3AP56704 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
WNT3AP56704 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.54■■□□□ 1.2
WNT3AP56704 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC22.53■■□□□ 1.2
WNT3AP56704 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.53■■□□□ 1.2
WNT3AP56704 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.53■■□□□ 1.2
WNT3AP56704 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.53■■□□□ 1.2
WNT3AP56704 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
WNT3AP56704 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
WNT3AP56704 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
WNT3AP56704 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.53■■□□□ 1.2
WNT3AP56704 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
WNT3AP56704 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
WNT3AP56704 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.53■■□□□ 1.2
WNT3AP56704 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC22.53■■□□□ 1.2
WNT3AP56704 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.53■■□□□ 1.2
WNT3AP56704 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.53■■□□□ 1.2
WNT3AP56704 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.53■■□□□ 1.2
WNT3AP56704 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
WNT3AP56704 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.53■■□□□ 1.2
WNT3AP56704 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
WNT3AP56704 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
WNT3AP56704 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
WNT3AP56704 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
WNT3AP56704 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
WNT3AP56704 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
WNT3AP56704 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC22.52■■□□□ 1.2
WNT3AP56704 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.52■■□□□ 1.2
WNT3AP56704 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.52■■□□□ 1.2
WNT3AP56704 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.2
WNT3AP56704 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
WNT3AP56704 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.51■■□□□ 1.19
WNT3AP56704 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
WNT3AP56704 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.51■■□□□ 1.19
WNT3AP56704 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.51■■□□□ 1.19
WNT3AP56704 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.51■■□□□ 1.19
WNT3AP56704 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.51■■□□□ 1.19
WNT3AP56704 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.51■■□□□ 1.19
WNT3AP56704 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.51■■□□□ 1.19
WNT3AP56704 AL512631.2-201ENST00000604634 923 ntBASIC22.51■■□□□ 1.19
WNT3AP56704 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
WNT3AP56704 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.51■■□□□ 1.19
WNT3AP56704 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
WNT3AP56704 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.5■■□□□ 1.19
WNT3AP56704 AC012676.1-201ENST00000574705 1949 ntBASIC22.5■■□□□ 1.19
WNT3AP56704 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
WNT3AP56704 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
WNT3AP56704 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
WNT3AP56704 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
WNT3AP56704 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC22.49■■□□□ 1.19
WNT3AP56704 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.49■■□□□ 1.19
WNT3AP56704 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.49■■□□□ 1.19
WNT3AP56704 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
WNT3AP56704 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
WNT3AP56704 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.49■■□□□ 1.19
WNT3AP56704 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC22.49■■□□□ 1.19
WNT3AP56704 TRIR-202ENST00000588213 841 ntTSL 3 BASIC22.49■■□□□ 1.19
WNT3AP56704 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
WNT3AP56704 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.49■■□□□ 1.19
WNT3AP56704 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
WNT3AP56704 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC22.48■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms