Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLK3P49761 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.02■□□□□ 0.96
CLK3P49761 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.02■□□□□ 0.96
CLK3P49761 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.02■□□□□ 0.96
CLK3P49761 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.02■□□□□ 0.96
CLK3P49761 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.02■□□□□ 0.96
CLK3P49761 MTDHP2-201ENST00000601468 714 ntBASIC21.02■□□□□ 0.96
CLK3P49761 SNX5-217ENST00000606557 1087 ntBASIC21.02■□□□□ 0.96
CLK3P49761 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
CLK3P49761 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLK3P49761 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC21.02■□□□□ 0.96
CLK3P49761 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLK3P49761 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLK3P49761 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.02■□□□□ 0.96
CLK3P49761 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.02■□□□□ 0.95
CLK3P49761 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLK3P49761 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLK3P49761 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.02■□□□□ 0.95
CLK3P49761 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CLK3P49761 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CLK3P49761 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
CLK3P49761 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.01■□□□□ 0.95
CLK3P49761 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.01■□□□□ 0.95
CLK3P49761 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLK3P49761 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CLK3P49761 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CLK3P49761 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLK3P49761 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLK3P49761 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLK3P49761 GUSBP5-202ENST00000510805 1989 ntBASIC21■□□□□ 0.95
CLK3P49761 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21■□□□□ 0.95
CLK3P49761 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21■□□□□ 0.95
CLK3P49761 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21■□□□□ 0.95
CLK3P49761 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLK3P49761 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLK3P49761 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLK3P49761 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21■□□□□ 0.95
CLK3P49761 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CLK3P49761 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLK3P49761 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.99■□□□□ 0.95
CLK3P49761 TSPY9P-201ENST00000440215 945 ntBASIC20.99■□□□□ 0.95
CLK3P49761 TSPY11P-201ENST00000442607 1045 ntBASIC20.99■□□□□ 0.95
CLK3P49761 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.99■□□□□ 0.95
CLK3P49761 MIR6722-201ENST00000617286 78 ntBASIC20.99■□□□□ 0.95
CLK3P49761 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.99■□□□□ 0.95
CLK3P49761 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLK3P49761 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CLK3P49761 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.98■□□□□ 0.95
CLK3P49761 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.98■□□□□ 0.95
CLK3P49761 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.98■□□□□ 0.95
CLK3P49761 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.98■□□□□ 0.95
CLK3P49761 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
CLK3P49761 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.98■□□□□ 0.95
CLK3P49761 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CLK3P49761 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLK3P49761 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
CLK3P49761 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLK3P49761 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLK3P49761 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.97■□□□□ 0.95
CLK3P49761 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLK3P49761 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
CLK3P49761 AC010997.5-201ENST00000609182 354 ntBASIC20.97■□□□□ 0.95
CLK3P49761 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLK3P49761 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
CLK3P49761 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CLK3P49761 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CLK3P49761 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
CLK3P49761 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms