Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.91■□□□□ 0.94
SOX3P41225 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
SOX3P41225 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SOX3P41225 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SOX3P41225 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX3P41225 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.9■□□□□ 0.94
SOX3P41225 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SOX3P41225 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SOX3P41225 AC009102.2-201ENST00000606772 1639 ntBASIC20.89■□□□□ 0.94
SOX3P41225 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SOX3P41225 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.89■□□□□ 0.94
SOX3P41225 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SOX3P41225 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SOX3P41225 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SOX3P41225 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SOX3P41225 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.89■□□□□ 0.93
SOX3P41225 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
SOX3P41225 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
SOX3P41225 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.89■□□□□ 0.93
SOX3P41225 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX3P41225 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SOX3P41225 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.88■□□□□ 0.93
SOX3P41225 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX3P41225 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.88■□□□□ 0.93
SOX3P41225 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX3P41225 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX3P41225 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SOX3P41225 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.88■□□□□ 0.93
SOX3P41225 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
SOX3P41225 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX3P41225 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
SOX3P41225 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SOX3P41225 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX3P41225 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.87■□□□□ 0.93
SOX3P41225 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.87■□□□□ 0.93
SOX3P41225 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX3P41225 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.87■□□□□ 0.93
SOX3P41225 AC096631.2-201ENST00000436136 790 ntBASIC20.87■□□□□ 0.93
SOX3P41225 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX3P41225 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX3P41225 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX3P41225 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SOX3P41225 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
SOX3P41225 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX3P41225 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SOX3P41225 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.86■□□□□ 0.93
SOX3P41225 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
SOX3P41225 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.86■□□□□ 0.93
SOX3P41225 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.86■□□□□ 0.93
SOX3P41225 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.86■□□□□ 0.93
SOX3P41225 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
SOX3P41225 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.86■□□□□ 0.93
SOX3P41225 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.86■□□□□ 0.93
SOX3P41225 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
SOX3P41225 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX3P41225 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.85■□□□□ 0.93
SOX3P41225 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.85■□□□□ 0.93
SOX3P41225 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SOX3P41225 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.85■□□□□ 0.93
SOX3P41225 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX3P41225 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.85■□□□□ 0.93
SOX3P41225 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SOX3P41225 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SOX3P41225 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.85■□□□□ 0.93
SOX3P41225 AC110285.6-201ENST00000617652 491 ntBASIC20.85■□□□□ 0.93
SOX3P41225 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
SOX3P41225 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.85■□□□□ 0.93
SOX3P41225 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SOX3P41225 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX3P41225 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SOX3P41225 AL117328.2-201ENST00000624617 1940 ntBASIC20.84■□□□□ 0.93
SOX3P41225 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX3P41225 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.84■□□□□ 0.93
SOX3P41225 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX3P41225 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX3P41225 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SOX3P41225 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.84■□□□□ 0.93
SOX3P41225 AL139246.5-201ENST00000606645 996 ntBASIC20.84■□□□□ 0.93
SOX3P41225 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.84■□□□□ 0.93
SOX3P41225 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SOX3P41225 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX3P41225 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.84■□□□□ 0.93
SOX3P41225 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
SOX3P41225 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
SOX3P41225 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX3P41225 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.83■□□□□ 0.93
SOX3P41225 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX3P41225 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX3P41225 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
SOX3P41225 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
SOX3P41225 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.83■□□□□ 0.93
SOX3P41225 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.83■□□□□ 0.93
SOX3P41225 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.83■□□□□ 0.93
SOX3P41225 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.83■□□□□ 0.92
SOX3P41225 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
SOX3P41225 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.82■□□□□ 0.92
SOX3P41225 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
SOX3P41225 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SOX3P41225 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
SOX3P41225 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms