Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC23.93■■□□□ 1.42
SCN1AP35498 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SCN1AP35498 AC092068.2-201ENST00000590491 1708 ntBASIC23.93■■□□□ 1.42
SCN1AP35498 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.93■■□□□ 1.42
SCN1AP35498 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC23.93■■□□□ 1.42
SCN1AP35498 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC23.93■■□□□ 1.42
SCN1AP35498 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SCN1AP35498 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SCN1AP35498 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC23.92■■□□□ 1.42
SCN1AP35498 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SCN1AP35498 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SCN1AP35498 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.92■■□□□ 1.42
SCN1AP35498 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC23.92■■□□□ 1.42
SCN1AP35498 AL499627.2-201ENST00000606283 725 ntBASIC23.92■■□□□ 1.42
SCN1AP35498 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC23.92■■□□□ 1.42
SCN1AP35498 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.92■■□□□ 1.42
SCN1AP35498 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC23.92■■□□□ 1.42
SCN1AP35498 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.91■■□□□ 1.42
SCN1AP35498 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.91■■□□□ 1.42
SCN1AP35498 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.91■■□□□ 1.42
SCN1AP35498 AL355001.2-201ENST00000620617 1191 ntBASIC23.91■■□□□ 1.42
SCN1AP35498 AL136967.2-201ENST00000623968 743 ntBASIC23.91■■□□□ 1.42
SCN1AP35498 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.91■■□□□ 1.42
SCN1AP35498 AC133637.1-201ENST00000624115 1537 ntBASIC23.91■■□□□ 1.42
SCN1AP35498 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SCN1AP35498 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SCN1AP35498 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC23.91■■□□□ 1.42
SCN1AP35498 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SCN1AP35498 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC23.91■■□□□ 1.42
SCN1AP35498 DUX4L4-201ENST00000566884 1269 ntBASIC23.91■■□□□ 1.42
SCN1AP35498 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC23.91■■□□□ 1.42
SCN1AP35498 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.91■■□□□ 1.42
SCN1AP35498 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC23.91■■□□□ 1.42
SCN1AP35498 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC23.91■■□□□ 1.42
SCN1AP35498 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SCN1AP35498 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC23.9■■□□□ 1.42
SCN1AP35498 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC23.9■■□□□ 1.42
SCN1AP35498 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
SCN1AP35498 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SCN1AP35498 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SCN1AP35498 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.42
SCN1AP35498 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
SCN1AP35498 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
SCN1AP35498 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.89■■□□□ 1.42
SCN1AP35498 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC23.89■■□□□ 1.42
SCN1AP35498 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SCN1AP35498 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SCN1AP35498 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SCN1AP35498 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.89■■□□□ 1.41
SCN1AP35498 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC23.89■■□□□ 1.41
SCN1AP35498 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
SCN1AP35498 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC23.89■■□□□ 1.41
SCN1AP35498 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.89■■□□□ 1.41
SCN1AP35498 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
SCN1AP35498 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.89■■□□□ 1.41
SCN1AP35498 ANOS2P-203ENST00000472227 1816 ntBASIC23.89■■□□□ 1.41
SCN1AP35498 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SCN1AP35498 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SCN1AP35498 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.88■■□□□ 1.41
SCN1AP35498 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SCN1AP35498 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.88■■□□□ 1.41
SCN1AP35498 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
SCN1AP35498 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.88■■□□□ 1.41
SCN1AP35498 RASA4CP-201ENST00000424092 1398 ntBASIC23.88■■□□□ 1.41
SCN1AP35498 LINC01529-204ENST00000636474 1715 ntBASIC23.88■■□□□ 1.41
SCN1AP35498 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
SCN1AP35498 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
SCN1AP35498 AC099791.1-201ENST00000416440 715 ntBASIC23.88■■□□□ 1.41
SCN1AP35498 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC23.87■■□□□ 1.41
SCN1AP35498 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
SCN1AP35498 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SCN1AP35498 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC23.87■■□□□ 1.41
SCN1AP35498 AC105265.2-201ENST00000467189 838 ntBASIC23.87■■□□□ 1.41
SCN1AP35498 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC23.87■■□□□ 1.41
SCN1AP35498 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.87■■□□□ 1.41
SCN1AP35498 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SCN1AP35498 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC23.87■■□□□ 1.41
SCN1AP35498 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
SCN1AP35498 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
SCN1AP35498 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.86■■□□□ 1.41
SCN1AP35498 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 AC008764.7-201ENST00000593779 1081 ntBASIC23.86■■□□□ 1.41
SCN1AP35498 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.86■■□□□ 1.41
SCN1AP35498 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC23.86■■□□□ 1.41
SCN1AP35498 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.86■■□□□ 1.41
SCN1AP35498 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SCN1AP35498 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SCN1AP35498 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SCN1AP35498 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SCN1AP35498 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC23.85■■□□□ 1.41
SCN1AP35498 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms