Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 HES6-204ENST00000409182 863 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 RNF146-205ENST00000477776 762 ntTSL 3 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 TK2-216ENST00000564917 1156 ntTSL 3 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
HLA-DMBP28068 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HLA-DMBP28068 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DMBP28068 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DMBP28068 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DMBP28068 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DMBP28068 LINC00565-201ENST00000562710 2331 ntBASIC16.92■□□□□ 0.3
HLA-DMBP28068 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC16.92■□□□□ 0.3
HLA-DMBP28068 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DMBP28068 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DMBP28068 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
HLA-DMBP28068 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DMBP28068 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
HLA-DMBP28068 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
HLA-DMBP28068 AL353803.4-201ENST00000565882 1934 ntBASIC16.92■□□□□ 0.3
HLA-DMBP28068 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DMBP28068 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DMBP28068 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC16.91■□□□□ 0.3
HLA-DMBP28068 GCA-201ENST00000233612 1694 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DMBP28068 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DMBP28068 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HLA-DMBP28068 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC16.91■□□□□ 0.3
HLA-DMBP28068 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
HLA-DMBP28068 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DMBP28068 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DMBP28068 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DMBP28068 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
HLA-DMBP28068 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DMBP28068 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC16.91■□□□□ 0.3
HLA-DMBP28068 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DMBP28068 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
HLA-DMBP28068 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC16.9■□□□□ 0.3
HLA-DMBP28068 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DMBP28068 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DMBP28068 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DMBP28068 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.9■□□□□ 0.3
HLA-DMBP28068 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DMBP28068 LSM7-203ENST00000585409 512 ntTSL 2 BASIC16.9■□□□□ 0.3
HLA-DMBP28068 SNX5-217ENST00000606557 1087 ntBASIC16.9■□□□□ 0.3
HLA-DMBP28068 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DMBP28068 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
HLA-DMBP28068 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DMBP28068 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
HLA-DMBP28068 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC16.9■□□□□ 0.3
HLA-DMBP28068 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC16.89■□□□□ 0.3
HLA-DMBP28068 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
HLA-DMBP28068 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
HLA-DMBP28068 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
HLA-DMBP28068 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DMBP28068 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC16.89■□□□□ 0.29
HLA-DMBP28068 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DMBP28068 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DMBP28068 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC16.89■□□□□ 0.29
HLA-DMBP28068 SENP5-202ENST00000419026 973 ntTSL 3 BASIC16.89■□□□□ 0.29
HLA-DMBP28068 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.89■□□□□ 0.29
HLA-DMBP28068 OR2A1-AS1-204ENST00000470435 602 ntBASIC16.89■□□□□ 0.29
HLA-DMBP28068 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC16.89■□□□□ 0.29
HLA-DMBP28068 LSR-203ENST00000360798 1963 ntTSL 2 BASIC16.89■□□□□ 0.29
HLA-DMBP28068 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DMBP28068 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DMBP28068 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DMBP28068 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
HLA-DMBP28068 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
HLA-DMBP28068 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC16.88■□□□□ 0.29
HLA-DMBP28068 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DMBP28068 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DMBP28068 LINC00526-201ENST00000581067 1875 ntBASIC16.88■□□□□ 0.29
HLA-DMBP28068 CLDN5-201ENST00000403084 2357 ntBASIC16.88■□□□□ 0.29
HLA-DMBP28068 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DMBP28068 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DMBP28068 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DMBP28068 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC16.88■□□□□ 0.29
HLA-DMBP28068 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.88■□□□□ 0.29
HLA-DMBP28068 AC239859.2-201ENST00000444165 318 ntBASIC16.88■□□□□ 0.29
HLA-DMBP28068 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC16.88■□□□□ 0.29
HLA-DMBP28068 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC16.88■□□□□ 0.29
HLA-DMBP28068 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
HLA-DMBP28068 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
HLA-DMBP28068 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms