Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL1P09341 AGPS-202ENST00000409888 815 ntTSL 4 BASIC17.3■□□□□ 0.36
CXCL1P09341 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL1P09341 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CXCL1P09341 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL1P09341 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CXCL1P09341 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CXCL1P09341 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL1P09341 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL1P09341 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
CXCL1P09341 AL157384.1-201ENST00000445995 2473 ntBASIC17.29■□□□□ 0.36
CXCL1P09341 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL1P09341 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.29■□□□□ 0.36
CXCL1P09341 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL1P09341 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL1P09341 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL1P09341 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.29■□□□□ 0.36
CXCL1P09341 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CXCL1P09341 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
CXCL1P09341 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.29■□□□□ 0.36
CXCL1P09341 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
CXCL1P09341 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.28■□□□□ 0.36
CXCL1P09341 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
CXCL1P09341 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CXCL1P09341 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
CXCL1P09341 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
CXCL1P09341 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC17.27■□□□□ 0.36
CXCL1P09341 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.27■□□□□ 0.36
CXCL1P09341 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CXCL1P09341 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC17.27■□□□□ 0.36
CXCL1P09341 PFN2-211ENST00000489155 636 ntTSL 4 BASIC17.27■□□□□ 0.36
CXCL1P09341 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
CXCL1P09341 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC17.26■□□□□ 0.35
CXCL1P09341 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC17.26■□□□□ 0.35
CXCL1P09341 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC17.26■□□□□ 0.35
CXCL1P09341 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CXCL1P09341 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CXCL1P09341 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL1P09341 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC17.25■□□□□ 0.35
CXCL1P09341 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC17.25■□□□□ 0.35
CXCL1P09341 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CXCL1P09341 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL1P09341 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CXCL1P09341 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.25■□□□□ 0.35
CXCL1P09341 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL1P09341 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL1P09341 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC17.24■□□□□ 0.35
CXCL1P09341 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL1P09341 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC17.24■□□□□ 0.35
CXCL1P09341 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL1P09341 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CXCL1P09341 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.23■□□□□ 0.35
CXCL1P09341 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC17.23■□□□□ 0.35
CXCL1P09341 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC17.23■□□□□ 0.35
CXCL1P09341 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
CXCL1P09341 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CXCL1P09341 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.23■□□□□ 0.35
CXCL1P09341 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC17.23■□□□□ 0.35
CXCL1P09341 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.23■□□□□ 0.35
CXCL1P09341 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CXCL1P09341 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL1P09341 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CXCL1P09341 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL1P09341 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CXCL1P09341 MIR3960-201ENST00000583311 91 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms