Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 AC131281.2-201ENST00000520478 145 ntBASIC22.68■■□□□ 1.22
HLA-DQB2P05538 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 MIR4466-201ENST00000606121 54 ntBASIC22.68■■□□□ 1.22
HLA-DQB2P05538 AC131212.1-201ENST00000613771 668 ntBASIC22.68■■□□□ 1.22
HLA-DQB2P05538 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
HLA-DQB2P05538 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 DUX4L4-201ENST00000566884 1269 ntBASIC22.67■■□□□ 1.22
HLA-DQB2P05538 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 LTK-203ENST00000453182 2412 ntTSL 2 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
HLA-DQB2P05538 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
HLA-DQB2P05538 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DQB2P05538 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.65■■□□□ 1.22
HLA-DQB2P05538 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.65■■□□□ 1.22
HLA-DQB2P05538 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.65■■□□□ 1.22
HLA-DQB2P05538 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DQB2P05538 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DQB2P05538 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
HLA-DQB2P05538 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
HLA-DQB2P05538 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
HLA-DQB2P05538 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.64■■□□□ 1.22
HLA-DQB2P05538 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
HLA-DQB2P05538 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.64■■□□□ 1.21
HLA-DQB2P05538 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DQB2P05538 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DQB2P05538 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DQB2P05538 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.21
HLA-DQB2P05538 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DQB2P05538 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
HLA-DQB2P05538 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC22.64■■□□□ 1.21
HLA-DQB2P05538 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.63■■□□□ 1.21
HLA-DQB2P05538 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC22.62■■□□□ 1.21
HLA-DQB2P05538 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 AC006455.2-201ENST00000429931 906 ntBASIC22.62■■□□□ 1.21
HLA-DQB2P05538 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 AC099791.2-201ENST00000605725 427 ntBASIC22.62■■□□□ 1.21
HLA-DQB2P05538 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.62■■□□□ 1.21
HLA-DQB2P05538 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 AC133561.1-201ENST00000568600 2415 ntBASIC22.62■■□□□ 1.21
HLA-DQB2P05538 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.62■■□□□ 1.21
HLA-DQB2P05538 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC22.61■■□□□ 1.21
HLA-DQB2P05538 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC22.61■■□□□ 1.21
HLA-DQB2P05538 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC22.61■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms