Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.33■■□□□ 1.01
SEMA3DO95025 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.33■■□□□ 1.01
SEMA3DO95025 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
SEMA3DO95025 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SEMA3DO95025 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
SEMA3DO95025 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.33■■□□□ 1
SEMA3DO95025 AC009102.2-201ENST00000606772 1639 ntBASIC21.33■■□□□ 1
SEMA3DO95025 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.32■■□□□ 1
SEMA3DO95025 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.32■■□□□ 1
SEMA3DO95025 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.32■■□□□ 1
SEMA3DO95025 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.32■■□□□ 1
SEMA3DO95025 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC21.32■■□□□ 1
SEMA3DO95025 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.32■■□□□ 1
SEMA3DO95025 KRT16P3-201ENST00000439127 1283 ntBASIC21.32■■□□□ 1
SEMA3DO95025 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.32■■□□□ 1
SEMA3DO95025 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
SEMA3DO95025 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.31■■□□□ 1
SEMA3DO95025 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.31■■□□□ 1
SEMA3DO95025 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
SEMA3DO95025 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
SEMA3DO95025 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.31■■□□□ 1
SEMA3DO95025 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
SEMA3DO95025 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.31■■□□□ 1
SEMA3DO95025 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
SEMA3DO95025 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.31■■□□□ 1
SEMA3DO95025 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
SEMA3DO95025 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
SEMA3DO95025 LINC01529-204ENST00000636474 1715 ntBASIC21.3■■□□□ 1
SEMA3DO95025 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.3■■□□□ 1
SEMA3DO95025 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.3■■□□□ 1
SEMA3DO95025 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
SEMA3DO95025 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
SEMA3DO95025 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
SEMA3DO95025 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.3■■□□□ 1
SEMA3DO95025 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
SEMA3DO95025 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
SEMA3DO95025 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.29■■□□□ 1
SEMA3DO95025 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC21.29■■□□□ 1
SEMA3DO95025 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21.29■■□□□ 1
SEMA3DO95025 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.29■■□□□ 1
SEMA3DO95025 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.29■■□□□ 1
SEMA3DO95025 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
SEMA3DO95025 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.29■■□□□ 1
SEMA3DO95025 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SEMA3DO95025 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SEMA3DO95025 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.28■■□□□ 1
SEMA3DO95025 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.28■■□□□ 1
SEMA3DO95025 C9orf163-202ENST00000624034 2573 ntBASIC21.28■■□□□ 1
SEMA3DO95025 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SEMA3DO95025 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.28■■□□□ 1
SEMA3DO95025 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
SEMA3DO95025 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.28■■□□□ 1
SEMA3DO95025 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.28■■□□□ 1
SEMA3DO95025 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.28■■□□□ 1
SEMA3DO95025 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
SEMA3DO95025 C17orf82-201ENST00000623772 1530 ntBASIC21.28■■□□□ 1
SEMA3DO95025 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.28■■□□□ 1
SEMA3DO95025 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
SEMA3DO95025 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.27■■□□□ 1
SEMA3DO95025 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SEMA3DO95025 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.27■■□□□ 1
SEMA3DO95025 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.27■■□□□ 1
SEMA3DO95025 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.27■■□□□ 1
SEMA3DO95025 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.27■■□□□ 1
SEMA3DO95025 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
SEMA3DO95025 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.27■■□□□ 1
SEMA3DO95025 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SEMA3DO95025 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SEMA3DO95025 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SEMA3DO95025 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
SEMA3DO95025 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.27■□□□□ 0.99
SEMA3DO95025 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■□□□□ 0.99
SEMA3DO95025 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
SEMA3DO95025 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.26■□□□□ 0.99
SEMA3DO95025 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.26■□□□□ 0.99
SEMA3DO95025 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.26■□□□□ 0.99
SEMA3DO95025 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.26■□□□□ 0.99
SEMA3DO95025 DUX4L4-201ENST00000566884 1269 ntBASIC21.26■□□□□ 0.99
SEMA3DO95025 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
SEMA3DO95025 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SEMA3DO95025 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
SEMA3DO95025 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SEMA3DO95025 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
SEMA3DO95025 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SEMA3DO95025 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SEMA3DO95025 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SEMA3DO95025 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.25■□□□□ 0.99
SEMA3DO95025 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.25■□□□□ 0.99
SEMA3DO95025 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SEMA3DO95025 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.25■□□□□ 0.99
SEMA3DO95025 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SEMA3DO95025 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms