Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC35.23■■■■□ 3.23
PCF11O94913 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC35.23■■■■□ 3.23
PCF11O94913 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC35.22■■■■□ 3.23
PCF11O94913 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC35.22■■■■□ 3.23
PCF11O94913 SHD-204ENST00000599689 1729 ntTSL 5 BASIC35.22■■■■□ 3.23
PCF11O94913 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC35.22■■■■□ 3.23
PCF11O94913 LINC00543-201ENST00000567234 1845 ntBASIC35.22■■■■□ 3.23
PCF11O94913 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC35.22■■■■□ 3.23
PCF11O94913 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC35.22■■■■□ 3.23
PCF11O94913 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
PCF11O94913 DUX4L2-201ENST00000561772 1275 ntBASIC35.21■■■■□ 3.23
PCF11O94913 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC35.21■■■■□ 3.23
PCF11O94913 MIR6084-201ENST00000622012 110 ntBASIC35.21■■■■□ 3.23
PCF11O94913 DUX4L6-201ENST00000626483 1275 ntBASIC35.21■■■■□ 3.23
PCF11O94913 DUX4L1-201ENST00000627662 1275 ntBASIC35.21■■■■□ 3.23
PCF11O94913 DUX4L8-201ENST00000629013 1275 ntBASIC35.21■■■■□ 3.23
PCF11O94913 DUX4L3-201ENST00000630187 1275 ntBASIC35.21■■■■□ 3.23
PCF11O94913 DUX4L7-201ENST00000630678 1275 ntBASIC35.21■■■■□ 3.23
PCF11O94913 DUX4L5-201ENST00000630834 1275 ntBASIC35.21■■■■□ 3.23
PCF11O94913 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC35.21■■■■□ 3.23
PCF11O94913 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC35.21■■■■□ 3.23
PCF11O94913 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC35.21■■■■□ 3.23
PCF11O94913 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC35.21■■■■□ 3.23
PCF11O94913 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC35.21■■■■□ 3.23
PCF11O94913 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC35.2■■■■□ 3.23
PCF11O94913 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC35.2■■■■□ 3.23
PCF11O94913 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
PCF11O94913 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC35.2■■■■□ 3.23
PCF11O94913 KRT18P5-201ENST00000436075 1291 ntBASIC35.2■■■■□ 3.23
PCF11O94913 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC35.2■■■■□ 3.23
PCF11O94913 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC35.2■■■■□ 3.23
PCF11O94913 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC35.2■■■■□ 3.23
PCF11O94913 AC079630.1-202ENST00000618127 1840 ntBASIC35.19■■■■□ 3.22
PCF11O94913 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
PCF11O94913 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC35.19■■■■□ 3.22
PCF11O94913 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC35.19■■■■□ 3.22
PCF11O94913 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC35.19■■■■□ 3.22
PCF11O94913 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC35.19■■■■□ 3.22
PCF11O94913 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC35.18■■■■□ 3.22
PCF11O94913 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC35.18■■■■□ 3.22
PCF11O94913 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC35.18■■■■□ 3.22
PCF11O94913 MIR572-201ENST00000384983 95 ntBASIC35.18■■■■□ 3.22
PCF11O94913 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC35.18■■■■□ 3.22
PCF11O94913 AL137784.2-201ENST00000607332 1000 ntBASIC35.18■■■■□ 3.22
PCF11O94913 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC35.18■■■■□ 3.22
PCF11O94913 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC35.18■■■■□ 3.22
PCF11O94913 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC35.18■■■■□ 3.22
PCF11O94913 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC35.18■■■■□ 3.22
PCF11O94913 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
PCF11O94913 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC35.17■■■■□ 3.22
PCF11O94913 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC35.17■■■■□ 3.22
PCF11O94913 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
PCF11O94913 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC35.17■■■■□ 3.22
PCF11O94913 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC35.17■■■■□ 3.22
PCF11O94913 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC35.17■■■■□ 3.22
PCF11O94913 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC35.17■■■■□ 3.22
PCF11O94913 AC092437.1-201ENST00000624794 1048 ntBASIC35.17■■■■□ 3.22
PCF11O94913 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC35.16■■■■□ 3.22
PCF11O94913 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC35.16■■■■□ 3.22
PCF11O94913 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
PCF11O94913 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
PCF11O94913 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC35.16■■■■□ 3.22
PCF11O94913 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC35.16■■■■□ 3.22
PCF11O94913 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
PCF11O94913 FP325331.1-202ENST00000623531 1380 ntBASIC35.15■■■■□ 3.22
PCF11O94913 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC35.15■■■■□ 3.22
PCF11O94913 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC35.15■■■■□ 3.22
PCF11O94913 AL139125.2-201ENST00000623134 1869 ntBASIC35.15■■■■□ 3.22
PCF11O94913 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
PCF11O94913 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
PCF11O94913 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC35.14■■■■□ 3.22
PCF11O94913 LINC01124-201ENST00000409786 2117 ntBASIC35.14■■■■□ 3.22
PCF11O94913 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC35.14■■■■□ 3.22
PCF11O94913 RAB43-208ENST00000615093 783 ntTSL 5 BASIC35.14■■■■□ 3.22
PCF11O94913 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
PCF11O94913 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC35.14■■■■□ 3.22
PCF11O94913 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC35.13■■■■□ 3.22
PCF11O94913 AC034268.1-201ENST00000441047 882 ntBASIC35.13■■■■□ 3.21
PCF11O94913 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC35.13■■■■□ 3.21
PCF11O94913 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC35.13■■■■□ 3.21
PCF11O94913 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
PCF11O94913 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
PCF11O94913 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC35.12■■■■□ 3.21
PCF11O94913 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC35.12■■■■□ 3.21
PCF11O94913 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
PCF11O94913 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC35.12■■■■□ 3.21
PCF11O94913 AC004812.2-201ENST00000611079 2094 ntBASIC35.12■■■■□ 3.21
PCF11O94913 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC35.12■■■■□ 3.21
PCF11O94913 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC35.12■■■■□ 3.21
PCF11O94913 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
PCF11O94913 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC35.12■■■■□ 3.21
PCF11O94913 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC35.11■■■■□ 3.21
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms