Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
USP1O94782 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.53■■□□□ 1.2
USP1O94782 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP1O94782 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
USP1O94782 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP1O94782 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP1O94782 BX664725.1-201ENST00000438252 379 ntBASIC22.52■■□□□ 1.2
USP1O94782 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC22.52■■□□□ 1.2
USP1O94782 PRTG-204ENST00000561292 833 ntTSL 3 BASIC22.52■■□□□ 1.2
USP1O94782 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.52■■□□□ 1.2
USP1O94782 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.52■■□□□ 1.2
USP1O94782 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
USP1O94782 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
USP1O94782 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP1O94782 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.51■■□□□ 1.19
USP1O94782 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
USP1O94782 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP1O94782 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP1O94782 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC22.51■■□□□ 1.19
USP1O94782 CLTA-210ENST00000540080 989 ntTSL 2 BASIC22.51■■□□□ 1.19
USP1O94782 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.51■■□□□ 1.19
USP1O94782 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP1O94782 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
USP1O94782 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.51■■□□□ 1.19
USP1O94782 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP1O94782 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.5■■□□□ 1.19
USP1O94782 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
USP1O94782 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC22.5■■□□□ 1.19
USP1O94782 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP1O94782 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
USP1O94782 AC144652.1-201ENST00000609974 1624 ntBASIC22.49■■□□□ 1.19
USP1O94782 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC22.49■■□□□ 1.19
USP1O94782 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
USP1O94782 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.49■■□□□ 1.19
USP1O94782 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
USP1O94782 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC22.49■■□□□ 1.19
USP1O94782 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
USP1O94782 AC005703.6-201ENST00000623265 1329 ntBASIC22.49■■□□□ 1.19
USP1O94782 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC22.49■■□□□ 1.19
USP1O94782 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC22.48■■□□□ 1.19
USP1O94782 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC22.48■■□□□ 1.19
USP1O94782 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.48■■□□□ 1.19
USP1O94782 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP1O94782 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC22.48■■□□□ 1.19
USP1O94782 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP1O94782 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP1O94782 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP1O94782 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
USP1O94782 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
USP1O94782 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
USP1O94782 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP1O94782 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
USP1O94782 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP1O94782 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
USP1O94782 RNF146-205ENST00000477776 762 ntTSL 3 BASIC22.47■■□□□ 1.19
USP1O94782 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP1O94782 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
USP1O94782 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP1O94782 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC22.47■■□□□ 1.19
USP1O94782 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
USP1O94782 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
USP1O94782 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.47■■□□□ 1.19
USP1O94782 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
USP1O94782 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.47■■□□□ 1.19
USP1O94782 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.47■■□□□ 1.19
USP1O94782 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP1O94782 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP1O94782 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
USP1O94782 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP1O94782 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP1O94782 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC22.46■■□□□ 1.19
USP1O94782 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
USP1O94782 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.45■■□□□ 1.19
USP1O94782 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
USP1O94782 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.45■■□□□ 1.18
USP1O94782 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
USP1O94782 AL451085.2-201ENST00000605085 799 ntBASIC22.45■■□□□ 1.18
USP1O94782 AL035685.1-201ENST00000636663 812 ntBASIC22.45■■□□□ 1.18
USP1O94782 ESRRAP2-201ENST00000418437 1549 ntBASIC22.45■■□□□ 1.18
USP1O94782 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.45■■□□□ 1.18
USP1O94782 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
USP1O94782 GUSBP5-202ENST00000510805 1989 ntBASIC22.45■■□□□ 1.18
USP1O94782 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP1O94782 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP1O94782 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP1O94782 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.44■■□□□ 1.18
USP1O94782 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
USP1O94782 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.44■■□□□ 1.18
USP1O94782 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22.44■■□□□ 1.18
USP1O94782 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.44■■□□□ 1.18
USP1O94782 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
USP1O94782 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.44■■□□□ 1.18
USP1O94782 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC22.44■■□□□ 1.18
USP1O94782 Z92544.1-202ENST00000571933 1220 ntBASIC22.44■■□□□ 1.18
USP1O94782 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.44■■□□□ 1.18
USP1O94782 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
USP1O94782 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.44■■□□□ 1.18
USP1O94782 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.44■■□□□ 1.18
USP1O94782 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
USP1O94782 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC22.44■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms