Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
BRD4O60885 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC31.01■■■□□ 2.55
BRD4O60885 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC31.01■■■□□ 2.55
BRD4O60885 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC31■■■□□ 2.55
BRD4O60885 EI24-213ENST00000618552 1747 ntTSL 5 BASIC31■■■□□ 2.55
BRD4O60885 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC31■■■□□ 2.55
BRD4O60885 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC31■■■□□ 2.55
BRD4O60885 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC31■■■□□ 2.55
BRD4O60885 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC31■■■□□ 2.55
BRD4O60885 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC31■■■□□ 2.55
BRD4O60885 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC30.99■■■□□ 2.55
BRD4O60885 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
BRD4O60885 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC30.99■■■□□ 2.55
BRD4O60885 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
BRD4O60885 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
BRD4O60885 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
BRD4O60885 GRAMD4P2-201ENST00000423297 1097 ntBASIC30.98■■■□□ 2.55
BRD4O60885 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC30.98■■■□□ 2.55
BRD4O60885 SP2-202ENST00000613139 908 ntTSL 5 BASIC30.98■■■□□ 2.55
BRD4O60885 USF2-207ENST00000595068 1612 ntTSL 5 BASIC30.98■■■□□ 2.55
BRD4O60885 ALDH1A3-203ENST00000557963 1670 ntBASIC30.98■■■□□ 2.55
BRD4O60885 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
BRD4O60885 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
BRD4O60885 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC30.97■■■□□ 2.55
BRD4O60885 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC30.97■■■□□ 2.55
BRD4O60885 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC30.97■■■□□ 2.55
BRD4O60885 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
BRD4O60885 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
BRD4O60885 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC30.96■■■□□ 2.55
BRD4O60885 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC30.96■■■□□ 2.55
BRD4O60885 pRNA.6-201ENST00000610482 90 ntBASIC30.96■■■□□ 2.55
BRD4O60885 pRNA.5-201ENST00000612139 90 ntBASIC30.96■■■□□ 2.55
BRD4O60885 pRNA.11-201ENST00000618423 90 ntBASIC30.96■■■□□ 2.55
BRD4O60885 pRNA.13-201ENST00000619112 90 ntBASIC30.96■■■□□ 2.55
BRD4O60885 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC30.96■■■□□ 2.55
BRD4O60885 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC30.96■■■□□ 2.55
BRD4O60885 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
BRD4O60885 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC30.95■■■□□ 2.55
BRD4O60885 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC30.95■■■□□ 2.55
BRD4O60885 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC30.95■■■□□ 2.55
BRD4O60885 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
BRD4O60885 YBX1P1-201ENST00000445822 960 ntBASIC30.95■■■□□ 2.55
BRD4O60885 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC30.95■■■□□ 2.55
BRD4O60885 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC30.95■■■□□ 2.55
BRD4O60885 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
BRD4O60885 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC30.95■■■□□ 2.55
BRD4O60885 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
BRD4O60885 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC30.95■■■□□ 2.54
BRD4O60885 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC30.95■■■□□ 2.54
BRD4O60885 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC30.95■■■□□ 2.54
BRD4O60885 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC30.94■■■□□ 2.54
BRD4O60885 AC034268.1-201ENST00000441047 882 ntBASIC30.94■■■□□ 2.54
BRD4O60885 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC30.94■■■□□ 2.54
BRD4O60885 AICDA-202ENST00000537228 667 ntTSL 5 BASIC30.94■■■□□ 2.54
BRD4O60885 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC30.94■■■□□ 2.54
BRD4O60885 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
BRD4O60885 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
BRD4O60885 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC30.94■■■□□ 2.54
BRD4O60885 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC30.94■■■□□ 2.54
BRD4O60885 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
BRD4O60885 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
BRD4O60885 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
BRD4O60885 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC30.93■■■□□ 2.54
BRD4O60885 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC30.93■■■□□ 2.54
BRD4O60885 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
BRD4O60885 RARA-203ENST00000394086 2008 ntTSL 2 BASIC30.93■■■□□ 2.54
BRD4O60885 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC30.93■■■□□ 2.54
BRD4O60885 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
BRD4O60885 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
BRD4O60885 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC30.92■■■□□ 2.54
BRD4O60885 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC30.92■■■□□ 2.54
BRD4O60885 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC30.92■■■□□ 2.54
BRD4O60885 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC30.92■■■□□ 2.54
BRD4O60885 AC027612.3-201ENST00000413684 1047 ntBASIC30.92■■■□□ 2.54
BRD4O60885 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
BRD4O60885 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
BRD4O60885 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
BRD4O60885 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC30.91■■■□□ 2.54
BRD4O60885 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
BRD4O60885 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC30.91■■■□□ 2.54
BRD4O60885 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
BRD4O60885 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
BRD4O60885 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
BRD4O60885 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
BRD4O60885 SLC47A1P1-202ENST00000449666 945 ntBASIC30.91■■■□□ 2.54
BRD4O60885 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
BRD4O60885 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC30.91■■■□□ 2.54
BRD4O60885 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
BRD4O60885 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC30.9■■■□□ 2.54
BRD4O60885 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC30.9■■■□□ 2.54
BRD4O60885 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC30.9■■■□□ 2.54
BRD4O60885 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
BRD4O60885 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
BRD4O60885 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC30.9■■■□□ 2.54
BRD4O60885 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
BRD4O60885 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC30.9■■■□□ 2.54
BRD4O60885 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
BRD4O60885 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC30.89■■■□□ 2.54
BRD4O60885 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC30.89■■■□□ 2.54
BRD4O60885 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC30.89■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms