Protein–RNA interactions for Protein: O60500

NPHS1, Nephrin, humanhuman

Predictions only

Length 1,241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHS1O60500 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.8■■□□□ 1.08
NPHS1O60500 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHS1O60500 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHS1O60500 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.8■■□□□ 1.08
NPHS1O60500 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
NPHS1O60500 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
NPHS1O60500 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
NPHS1O60500 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.79■■□□□ 1.08
NPHS1O60500 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 AC004987.1-201ENST00000428627 508 ntBASIC21.79■■□□□ 1.08
NPHS1O60500 ATP5G2P3-201ENST00000429083 425 ntBASIC21.79■■□□□ 1.08
NPHS1O60500 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHS1O60500 BRD4-212ENST00000630599 726 ntTSL 2 BASIC21.79■■□□□ 1.08
NPHS1O60500 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.79■■□□□ 1.08
NPHS1O60500 AC139530.1-201ENST00000575312 1977 ntBASIC21.79■■□□□ 1.08
NPHS1O60500 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
NPHS1O60500 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.78■■□□□ 1.08
NPHS1O60500 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHS1O60500 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHS1O60500 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHS1O60500 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHS1O60500 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHS1O60500 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHS1O60500 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
NPHS1O60500 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHS1O60500 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHS1O60500 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NPHS1O60500 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.78■■□□□ 1.08
NPHS1O60500 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.78■■□□□ 1.08
NPHS1O60500 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
NPHS1O60500 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHS1O60500 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
NPHS1O60500 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NPHS1O60500 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NPHS1O60500 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
NPHS1O60500 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
NPHS1O60500 AC144652.1-201ENST00000609974 1624 ntBASIC21.77■■□□□ 1.07
NPHS1O60500 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHS1O60500 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHS1O60500 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHS1O60500 AC092053.2-201ENST00000640557 1818 ntBASIC21.76■■□□□ 1.07
NPHS1O60500 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHS1O60500 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHS1O60500 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NPHS1O60500 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.76■■□□□ 1.07
NPHS1O60500 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.76■■□□□ 1.07
NPHS1O60500 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHS1O60500 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHS1O60500 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NPHS1O60500 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
NPHS1O60500 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
NPHS1O60500 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
NPHS1O60500 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHS1O60500 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHS1O60500 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHS1O60500 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHS1O60500 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHS1O60500 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHS1O60500 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHS1O60500 AC010980.1-201ENST00000587192 1142 ntBASIC21.75■■□□□ 1.07
NPHS1O60500 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHS1O60500 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.75■■□□□ 1.07
NPHS1O60500 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
NPHS1O60500 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NPHS1O60500 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.75■■□□□ 1.07
NPHS1O60500 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.74■■□□□ 1.07
NPHS1O60500 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.74■■□□□ 1.07
NPHS1O60500 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC21.74■■□□□ 1.07
NPHS1O60500 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.74■■□□□ 1.07
NPHS1O60500 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NPHS1O60500 MYB-221ENST00000527615 2381 ntTSL 5 BASIC21.74■■□□□ 1.07
NPHS1O60500 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
NPHS1O60500 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHS1O60500 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.73■■□□□ 1.07
NPHS1O60500 SNX5-217ENST00000606557 1087 ntBASIC21.73■■□□□ 1.07
NPHS1O60500 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.73■■□□□ 1.07
NPHS1O60500 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHS1O60500 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHS1O60500 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
NPHS1O60500 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHS1O60500 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
NPHS1O60500 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
NPHS1O60500 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.72■■□□□ 1.07
NPHS1O60500 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.72■■□□□ 1.07
NPHS1O60500 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms