Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MRPL44-201ENST00000258383 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 OCA2-202ENST00000354638 3186 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 WDR92-201ENST00000295121 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 TMEM147-AS1-205ENST00000590717 3300 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 FILIP1L-203ENST00000383694 3280 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 KCNMA1-216ENST00000457953 3976 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 CACNA1G-233ENST00000515765 6981 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 GLO1-201ENST00000373365 2012 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 ZNF571-AS1-203ENST00000586139 2684 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 AL391845.2-201ENST00000443930 1954 ntTSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 PAM-203ENST00000346918 3302 ntTSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 CRB3P1-201ENST00000449338 276 ntBASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 MIR3940-201ENST00000579148 102 ntBASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 AC008687.7-203ENST00000598442 551 ntTSL 4 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 LINC01002-209ENST00000631858 1761 ntTSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 CNTROB-203ENST00000565740 2783 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 PRTFDC1-201ENST00000320152 1944 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 CX3CL1-204ENST00000565912 5796 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 RNF219-AS1-209ENST00000606429 2418 ntTSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 PSMC4-201ENST00000157812 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 LAIR1-204ENST00000391743 2735 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 R3HDM2-204ENST00000402412 4372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 TREH-202ENST00000397925 1718 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 ZSCAN32-202ENST00000396846 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 LDB3-202ENST00000361373 5297 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 TRAF6-202ENST00000526995 4627 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 NFATC1-203ENST00000329101 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 CCDC163-203ENST00000626657 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 KNDC1-202ENST00000368571 3925 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
CCDC28BQ9BUN5 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 SH2D3C-202ENST00000373276 3051 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 LAS1L-201ENST00000374804 2261 ntTSL 2 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 NRF1-202ENST00000311967 2481 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 BCRP1-201ENST00000444246 691 ntBASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 AC007279.1-201ENST00000448547 837 ntBASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 SCARNA21-201ENST00000517026 139 ntBASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 AP000812.2-201ENST00000538934 718 ntBASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 AP001462.1-201ENST00000594089 452 ntBASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 RHOH-222ENST00000617441 1872 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
CCDC28BQ9BUN5 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms