Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 AC090505.1-201ENST00000430515 1834 ntBASIC13.62□□□□□ -0.23
COL6A3P12111 PPIL3-202ENST00000392283 1194 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 TPI1-202ENST00000396705 1231 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 PPIL3-204ENST00000409361 897 ntTSL 3 BASIC13.62□□□□□ -0.23
COL6A3P12111 AL732414.1-201ENST00000413346 573 ntBASIC13.62□□□□□ -0.23
COL6A3P12111 AL132671.1-201ENST00000415736 308 ntTSL 3 BASIC13.62□□□□□ -0.23
COL6A3P12111 AC103563.6-201ENST00000432787 295 ntBASIC13.62□□□□□ -0.23
COL6A3P12111 RPS19P7-201ENST00000455650 396 ntBASIC13.62□□□□□ -0.23
COL6A3P12111 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 TPO-203ENST00000346956 2923 ntTSL 5 BASIC13.62□□□□□ -0.23
COL6A3P12111 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
COL6A3P12111 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
COL6A3P12111 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 CLASP2-201ENST00000313350 1597 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 GBAP1-208ENST00000566701 1546 ntBASIC13.61□□□□□ -0.23
COL6A3P12111 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 MAPT-202ENST00000334239 1107 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 CYP17A1-AS1-201ENST00000369884 491 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 B9D1-204ENST00000395616 733 ntTSL 3 BASIC13.61□□□□□ -0.23
COL6A3P12111 CYTOR-202ENST00000409054 1096 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 INO80C-203ENST00000441607 904 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 BTNL8-207ENST00000511704 1260 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 ATP5G1-209ENST00000514808 359 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 KCTD14-202ENST00000533144 904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 AC091027.2-201ENST00000578030 179 ntTSL 5 BASIC13.61□□□□□ -0.23
COL6A3P12111 AC025048.4-201ENST00000589740 699 ntTSL 3 BASIC13.61□□□□□ -0.23
COL6A3P12111 LINC01828-205ENST00000594329 863 ntTSL 5 BASIC13.61□□□□□ -0.23
COL6A3P12111 AL139220.2-209ENST00000626342 826 ntTSL 5 BASIC13.61□□□□□ -0.23
COL6A3P12111 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 ACKR1-202ENST00000368122 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 ACAA2-205ENST00000587994 1657 ntAPPRIS ALT1 TSL 5 BASIC13.61□□□□□ -0.23
COL6A3P12111 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 SMN1-202ENST00000380707 1536 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 SMN2-203ENST00000380743 1536 ntAPPRIS P4 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 PROP1-201ENST00000308304 1464 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 COX17-201ENST00000261070 684 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 CSAG4-201ENST00000361201 755 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC13.61□□□□□ -0.23
COL6A3P12111 AC079988.1-201ENST00000432984 544 ntTSL 4 BASIC13.61□□□□□ -0.23
COL6A3P12111 AC010551.1-201ENST00000568458 469 ntTSL 4 BASIC13.61□□□□□ -0.23
COL6A3P12111 CSAG4-202ENST00000583763 237 ntBASIC13.61□□□□□ -0.23
COL6A3P12111 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 FMO6P-201ENST00000236166 1620 ntBASIC13.61□□□□□ -0.23
COL6A3P12111 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.61□□□□□ -0.23
COL6A3P12111 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 CCRL2-202ENST00000399036 1796 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
COL6A3P12111 AL078621.2-201ENST00000419351 698 ntBASIC13.61□□□□□ -0.23
COL6A3P12111 YBX1P7-201ENST00000436766 535 ntBASIC13.61□□□□□ -0.23
COL6A3P12111 HUNK-AS1-201ENST00000437109 616 ntTSL 3 BASIC13.61□□□□□ -0.23
COL6A3P12111 VPS33A-202ENST00000451053 1154 ntTSL 3 BASIC13.61□□□□□ -0.23
COL6A3P12111 AC068620.2-201ENST00000602927 529 ntBASIC13.61□□□□□ -0.23
COL6A3P12111 EPC2-203ENST00000409654 1624 ntTSL 3 BASIC13.61□□□□□ -0.23
COL6A3P12111 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC13.61□□□□□ -0.23
COL6A3P12111 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 AC022748.2-203ENST00000564933 1432 ntBASIC13.6□□□□□ -0.23
COL6A3P12111 AL390728.2-201ENST00000400933 1670 ntBASIC13.6□□□□□ -0.23
COL6A3P12111 ABR-228ENST00000574437 3196 ntTSL 5 BASIC13.6□□□□□ -0.23
COL6A3P12111 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 GYG2-204ENST00000381163 3393 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 CSH1-202ENST00000329882 1073 ntTSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 IGLV2-11-201ENST00000390314 400 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL6A3P12111 IGHV1-45-201ENST00000390621 411 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL6A3P12111 KCNK16-203ENST00000425054 1272 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 LINC01697-204ENST00000458316 1122 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 AC023794.3-201ENST00000514503 564 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A3P12111 AC109631.1-201ENST00000559695 781 ntBASIC13.6□□□□□ -0.23
COL6A3P12111 AC091167.7-201ENST00000622269 518 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
COL6A3P12111 OR5G5P-204ENST00000627642 621 ntBASIC13.6□□□□□ -0.23
COL6A3P12111 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL6A3P12111 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 AGAP7P-201ENST00000582299 2062 ntBASIC13.6□□□□□ -0.23
COL6A3P12111 AGAP14-201ENST00000624701 2060 ntBASIC13.6□□□□□ -0.23
COL6A3P12111 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL6A3P12111 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
COL6A3P12111 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC13.6□□□□□ -0.23
COL6A3P12111 AL445675.1-201ENST00000603868 1410 ntBASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms