Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 AC023968.2-201ENST00000560593 1049 ntBASIC16.14■□□□□ 0.17
HLA-DOAP06340 RN7SL605P-201ENST00000577229 281 ntBASIC16.14■□□□□ 0.17
HLA-DOAP06340 RN7SL134P-201ENST00000579756 303 ntBASIC16.14■□□□□ 0.17
HLA-DOAP06340 MBP-238ENST00000580402 915 ntTSL 5 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 AC020917.4-201ENST00000623994 1999 ntBASIC16.14■□□□□ 0.17
HLA-DOAP06340 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC16.14■□□□□ 0.17
HLA-DOAP06340 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HLA-DOAP06340 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 AC112250.1-201ENST00000504640 745 ntBASIC16.13■□□□□ 0.17
HLA-DOAP06340 GDNF-207ENST00000515058 764 ntTSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 AL118516.1-201ENST00000564152 670 ntBASIC16.13■□□□□ 0.17
HLA-DOAP06340 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 MEP1AP1-201ENST00000636082 1097 ntBASIC16.13■□□□□ 0.17
HLA-DOAP06340 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 PSEN2-202ENST00000366783 2306 ntAPPRIS P3 TSL 5 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HLA-DOAP06340 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HLA-DOAP06340 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 AL365181.3-201ENST00000605886 3222 ntBASIC16.12■□□□□ 0.17
HLA-DOAP06340 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 CNOT10-201ENST00000328834 2815 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 CALML6-201ENST00000307786 1101 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HLA-DOAP06340 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 SLC12A9-AS1-201ENST00000412754 369 ntTSL 3 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 RPL3P5-201ENST00000441645 1232 ntBASIC16.12■□□□□ 0.17
HLA-DOAP06340 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 AC012158.2-201ENST00000536546 354 ntBASIC16.12■□□□□ 0.17
HLA-DOAP06340 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.12■□□□□ 0.17
HLA-DOAP06340 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 230 ms