Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CLIC1-209ENST00000395892 1197 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 FTLP3-201ENST00000427242 528 ntBASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 MAF1-204ENST00000532522 1098 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 GABARAPL1-203ENST00000535576 792 ntTSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AL137779.3-201ENST00000553295 729 ntBASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 SALL1-204ENST00000566102 565 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AC092296.1-201ENST00000587018 566 ntTSL 4 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AC008894.2-202ENST00000599676 1027 ntTSL 3 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AC106774.4-201ENST00000600799 409 ntBASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 LINC00923-208ENST00000621777 503 ntTSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 BIVM-202ENST00000448849 3198 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 EVA1A-201ENST00000233712 1815 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 RPUSD4-208ENST00000533628 2053 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AL138762.1-201ENST00000608554 1637 ntBASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 LMO1-201ENST00000335790 1279 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 SFTPA2-202ENST00000372327 815 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 KRTAP10-10-201ENST00000380095 1100 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 MRPL36-201ENST00000382647 587 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 OR7E122P-201ENST00000383606 1017 ntBASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 ATP6AP2-202ENST00000423649 1093 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 C8orf37-AS1-203ENST00000521905 617 ntTSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 LMO1-204ENST00000534484 770 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AL139353.1-202ENST00000547378 474 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 SNAPC5-207ENST00000566658 574 ntAPPRIS ALT2 TSL 4 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 NPLOC4-214ENST00000573876 560 ntTSL 4 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 SNRPN-208ENST00000577565 1298 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 MIR378I-201ENST00000582688 76 ntBASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 LINC02340-202ENST00000620494 573 ntTSL 4 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AC073592.10-201ENST00000624789 597 ntBASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 OR2C1-201ENST00000304936 1406 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 AL022323.5-201ENST00000624101 2059 ntBASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHANK3Q9BYB0 GIMAP4-202ENST00000461940 1569 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 VRK3-205ENST00000593919 1979 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 LUC7L-203ENST00000397780 1335 ntTSL 5 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 MPI-208ENST00000563786 1707 ntTSL 5 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 PPARG-206ENST00000397012 2006 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 POTEC-201ENST00000358970 1629 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 USP28-214ENST00000545540 3431 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AL031728.1-201ENST00000449034 2479 ntTSL 3 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 SYCE1-201ENST00000303903 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 TPI1P3-201ENST00000335020 740 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AC004884.1-201ENST00000393647 319 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 B3GALNT1-204ENST00000417187 1107 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AL161644.1-201ENST00000426901 1111 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 OR52X1P-201ENST00000446117 914 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 RN7SL483P-201ENST00000478417 285 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AC139887.2-201ENST00000503571 531 ntTSL 4 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 RN7SKP195-201ENST00000516587 303 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AKR1B1P3-201ENST00000525311 588 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AC069503.1-201ENST00000538710 816 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 CALM3-206ENST00000594523 540 ntTSL 4 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AC020763.2-201ENST00000623155 1255 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AC002511.3-201ENST00000638098 420 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 MED27-201ENST00000292035 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 AC124944.3-201ENST00000607976 1304 ntBASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 SNCA-204ENST00000394989 3167 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC17.03■□□□□ 0.32
SHANK3Q9BYB0 SIRPG-205ENST00000381583 1383 ntTSL 5 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 RBMS3-210ENST00000456853 1394 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 CTCFL-211ENST00000502686 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 NRP1-202ENST00000374816 2804 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
SHANK3Q9BYB0 GZMH-201ENST00000216338 909 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms