Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 NHSL1-202ENST00000343505 6535 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AC093462.1-201ENST00000621167 1683 ntBASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 NME4-203ENST00000397722 1232 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 SNORD3B-1-201ENST00000577988 758 ntBASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 GAS7-216ENST00000583882 553 ntTSL 5 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AC092171.5-201ENST00000608012 942 ntBASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AC007881.3-201ENST00000608897 607 ntBASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AC007250.1-201ENST00000608934 338 ntBASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AC073352.2-201ENST00000609385 439 ntBASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 AC019109.1-201ENST00000401725 1874 ntBASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC13.8□□□□□ -0.2
TRIM39Q9HCM9 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 GRIN1-204ENST00000371553 3751 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 CEP70-201ENST00000264982 2732 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 HPSE2-206ENST00000628193 1760 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 FBN3-207ENST00000601739 9086 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC111170.3-201ENST00000624282 2464 ntBASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 ALDH7A1-201ENST00000409134 4964 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC092573.1-201ENST00000433054 884 ntBASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AL356218.1-201ENST00000450864 353 ntTSL 3 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 WDR7-208ENST00000589935 544 ntTSL 4 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AP000322.3-201ENST00000608665 388 ntBASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
TRIM39Q9HCM9 AC025262.2-201ENST00000623975 1056 ntBASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms