Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 REEP1-202ENST00000453231 940 ntTSL 2 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 AC090857.1-201ENST00000527400 390 ntBASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 AP001258.2-201ENST00000529891 490 ntBASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 DNM1P51-201ENST00000558149 522 ntBASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 PLIN3-201ENST00000221957 2333 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 TMEM123-202ENST00000398136 3579 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 DMTF1-201ENST00000331242 3801 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 PEX5-201ENST00000266563 3252 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
RSPO3Q9BXY4 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 HLA-DQB1-202ENST00000399079 1501 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 GLB1L-203ENST00000409640 2042 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 CEP63-215ENST00000606977 2800 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ZNF689-201ENST00000287461 3547 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 MEX3B-202ENST00000558133 4333 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 PGGHG-204ENST00000409655 2963 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ARHGEF9-203ENST00000374872 2364 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SRP54-201ENST00000216774 2279 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AC091181.1-201ENST00000623762 2098 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AC092902.2-210ENST00000468859 1996 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ITGB1BP1-201ENST00000238091 1772 ntTSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AL627231.1-201ENST00000394467 1125 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AC092573.1-201ENST00000433054 884 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 PRKCZ-AS1-202ENST00000444529 622 ntTSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AKR7A2P1-201ENST00000460134 915 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 STUB1-204ENST00000564370 875 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 MIR3677-201ENST00000578964 60 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 MIR4754-201ENST00000582477 89 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SEPT14P19-201ENST00000587432 336 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SIGLEC18P-201ENST00000602271 909 ntBASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 WDR92-201ENST00000295121 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 PICART1-201ENST00000499842 2533 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SLC23A1-202ENST00000353963 2303 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ZCRB1-201ENST00000266529 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 SERPING1-203ENST00000378323 1733 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 KRT42P-201ENST00000398469 2864 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ZNF274-210ENST00000610905 2559 ntAPPRIS P4 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 ERVK13-1-207ENST00000569465 3321 ntTSL 2 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC12.62□□□□□ -0.39
RSPO3Q9BXY4 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms