Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SHROOM3Q8TF72 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
SHROOM3Q8TF72 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
SHROOM3Q8TF72 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SHROOM3Q8TF72 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
SHROOM3Q8TF72 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC14.06□□□□□ -0.16
SHROOM3Q8TF72 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 MKS1-201ENST00000313863 2091 ntTSL 5 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 UROS-201ENST00000368774 744 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 CR383656.3-201ENST00000551315 183 ntBASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 MIR6842-201ENST00000612539 65 ntBASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 AC127024.7-201ENST00000625101 200 ntBASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 CDHR5-203ENST00000397542 3489 ntAPPRIS P4 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 SDR16C5-202ENST00000396721 2399 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 PRAME-202ENST00000398743 2196 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 CELP-201ENST00000411440 1249 ntTSL 5 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 AC018638.5-201ENST00000450885 754 ntBASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 GARS-210ENST00000627489 324 ntTSL 4 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 ANKDD1A-207ENST00000496660 1477 ntTSL 2 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
SHROOM3Q8TF72 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AC083964.2-201ENST00000623988 2396 ntBASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 EFHC1-221ENST00000636489 2421 ntTSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 LINC01679-201ENST00000442815 2798 ntTSL 3 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AL137058.1-201ENST00000418237 673 ntTSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 ZMIZ1-AS1-202ENST00000440151 814 ntTSL 3 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AC245884.1-201ENST00000457113 529 ntTSL 3 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 GFRA2-202ENST00000517328 2104 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AC007952.4-201ENST00000573866 637 ntBASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 ST5-261ENST00000626808 1071 ntTSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 SMYD4-201ENST00000305513 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 SAMD15-201ENST00000216471 2564 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SHROOM3Q8TF72 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms