Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 ABI2-213ENST00000424558 2240 ntTSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 FAM213A-204ENST00000372188 829 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 MIR632-201ENST00000385193 94 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 CST1-202ENST00000398402 655 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 AF274858.1-201ENST00000406288 372 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 SNORA50C-201ENST00000408535 133 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 RNLS-203ENST00000437752 525 ntTSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 GSS-202ENST00000451957 1092 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 AC120498.7-201ENST00000562876 330 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 AC079414.2-201ENST00000567157 1104 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 HNRNPA1P16-201ENST00000575692 955 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 AP001527.2-201ENST00000614441 631 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 AC137723.2-201ENST00000623540 398 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 SNORA50.1-201ENST00000628590 135 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 AC008536.3-201ENST00000623282 1599 ntBASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 GK-205ENST00000378946 3638 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
SHROOM1Q2M3G4 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 PTN-202ENST00000393083 1599 ntTSL 5 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AL157823.1-201ENST00000403727 628 ntBASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 RPL18AP16-201ENST00000424057 531 ntBASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 PRSS46-201ENST00000463091 982 ntAPPRIS P1 TSL 4 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 SRPK2P-201ENST00000523408 1100 ntBASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AC087741.1-204ENST00000573935 646 ntTSL 3 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 MIR5091-201ENST00000578707 93 ntBASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AC003070.1-201ENST00000592389 457 ntTSL 2 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AL356740.1-201ENST00000602192 1297 ntBASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 AC005840.4-201ENST00000541242 2494 ntBASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 GBAP1-208ENST00000566701 1546 ntBASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
SHROOM1Q2M3G4 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHROOM1Q2M3G4 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC15.92■□□□□ 0.14
SHROOM1Q2M3G4 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
SHROOM1Q2M3G4 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
SHROOM1Q2M3G4 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC15.92■□□□□ 0.14
SHROOM1Q2M3G4 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
SHROOM1Q2M3G4 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.92■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms