Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC15.62■□□□□ 0.09
TPM4P67936 AL022323.5-201ENST00000624101 2059 ntBASIC15.62■□□□□ 0.09
TPM4P67936 MANEA-AS1-201ENST00000564541 2268 ntBASIC15.62■□□□□ 0.09
TPM4P67936 POTEI-201ENST00000451531 7020 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 TNRC6C-205ENST00000588061 8419 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 PITPNM3-202ENST00000421306 6945 ntAPPRIS ALT2 TSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 LIMS1-205ENST00000410093 1526 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 AHCYP2-201ENST00000430630 1300 ntBASIC15.62■□□□□ 0.09
TPM4P67936 WDR81-205ENST00000437219 3184 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 KIAA1614-202ENST00000367588 9654 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 DCAF16-201ENST00000382247 4548 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 PTPN1-202ENST00000541713 3469 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 KCNIP1-208ENST00000520740 1845 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 ESYT3-202ENST00000389567 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 ATXN2L-225ENST00000570200 3635 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 SMPDL3B-202ENST00000373894 1878 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 CACNA1C-219ENST00000399649 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 ALG8-202ENST00000376156 1677 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC15.61■□□□□ 0.09
TPM4P67936 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.61■□□□□ 0.09
TPM4P67936 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC15.61■□□□□ 0.09
TPM4P67936 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC15.61■□□□□ 0.09
TPM4P67936 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC15.61■□□□□ 0.09
TPM4P67936 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.61■□□□□ 0.09
TPM4P67936 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.61■□□□□ 0.09
TPM4P67936 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC15.61■□□□□ 0.09
TPM4P67936 CYMP-203ENST00000474680 1263 ntBASIC15.61■□□□□ 0.09
TPM4P67936 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC15.61■□□□□ 0.09
TPM4P67936 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.61■□□□□ 0.09
TPM4P67936 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC15.61■□□□□ 0.09
TPM4P67936 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.61■□□□□ 0.09
TPM4P67936 AC015967.2-201ENST00000624092 234 ntBASIC15.61■□□□□ 0.09
TPM4P67936 AC006435.4-201ENST00000625037 234 ntBASIC15.61■□□□□ 0.09
TPM4P67936 AL356737.1-201ENST00000634391 234 ntBASIC15.61■□□□□ 0.09
TPM4P67936 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 CEP78-205ENST00000424347 11198 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
TPM4P67936 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 DLGAP1-212ENST00000515196 5314 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 AC008040.5-201ENST00000599781 1781 ntBASIC15.61■□□□□ 0.09
TPM4P67936 ZNF75D-202ENST00000370766 5592 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 AP003969.2-201ENST00000623739 2275 ntBASIC15.61■□□□□ 0.09
TPM4P67936 RALGAPB-201ENST00000262879 8663 ntAPPRIS P3 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 CT62-203ENST00000566432 2822 ntAPPRIS ALT2 TSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 SERPINB1-201ENST00000380739 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.61■□□□□ 0.09
TPM4P67936 BCL2L13-202ENST00000337612 4905 ntTSL 2 BASIC15.61■□□□□ 0.09
TPM4P67936 TMEM57-201ENST00000374343 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TPM4P67936 AC022364.1-202ENST00000617468 2409 ntBASIC15.6■□□□□ 0.09
TPM4P67936 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 AC144522.1-201ENST00000625111 1658 ntBASIC15.6■□□□□ 0.09
TPM4P67936 GSTM3-201ENST00000256594 4046 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 CEP112-202ENST00000392769 3517 ntAPPRIS P4 TSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 RNF111-201ENST00000348370 5913 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC15.6■□□□□ 0.09
TPM4P67936 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 NHEJ1-201ENST00000356853 2094 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 EXOC8-201ENST00000366645 5100 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TPM4P67936 CCBE1-201ENST00000398179 5979 ntTSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.6■□□□□ 0.09
TPM4P67936 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 AC006001.1-201ENST00000325130 474 ntBASIC15.6■□□□□ 0.09
TPM4P67936 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 AC003958.1-201ENST00000435883 421 ntBASIC15.6■□□□□ 0.09
TPM4P67936 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.6■□□□□ 0.09
TPM4P67936 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TPM4P67936 KRT90P-201ENST00000549264 1064 ntBASIC15.6■□□□□ 0.09
TPM4P67936 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms