Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HMGB1P09429 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 AC010970.1-201ENST00000445125 1848 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 DKKL1P1-201ENST00000400550 698 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 RPL8P2-201ENST00000430538 502 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 AL512306.1-201ENST00000432698 848 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGB1P09429 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HMGB1P09429 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGB1P09429 RN7SL767P-201ENST00000493013 295 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.34■□□□□ 0.21
HMGB1P09429 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC16.34■□□□□ 0.21
HMGB1P09429 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC16.34■□□□□ 0.21
HMGB1P09429 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.34■□□□□ 0.21
HMGB1P09429 AC012073.1-201ENST00000606114 1108 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC16.34■□□□□ 0.21
HMGB1P09429 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 SLC4A7-211ENST00000445684 4061 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 CAP2P1-201ENST00000557743 1390 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 AC019294.4-201ENST00000561777 2905 ntBASIC16.34■□□□□ 0.21
HMGB1P09429 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
HMGB1P09429 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 ERG-211ENST00000453032 1595 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGB1P09429 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
HMGB1P09429 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGB1P09429 AC026271.4-201ENST00000578214 1833 ntBASIC16.33■□□□□ 0.21
HMGB1P09429 AC019109.1-201ENST00000401725 1874 ntBASIC16.33■□□□□ 0.21
HMGB1P09429 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB1P09429 RHPN1-AS1-201ENST00000518049 1918 ntBASIC16.33■□□□□ 0.21
HMGB1P09429 AL118505.1-201ENST00000619370 1932 ntBASIC16.33■□□□□ 0.21
HMGB1P09429 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB1P09429 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB1P09429 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
HMGB1P09429 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB1P09429 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGB1P09429 TBCE-207ENST00000543662 2117 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.21
HMGB1P09429 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
HMGB1P09429 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC16.33■□□□□ 0.2
HMGB1P09429 OR2W2P-201ENST00000406313 909 ntBASIC16.33■□□□□ 0.2
HMGB1P09429 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 RPL3P2-204ENST00000413027 1203 ntBASIC16.33■□□□□ 0.2
HMGB1P09429 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGB1P09429 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB1P09429 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 NEU3-202ENST00000526068 431 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB1P09429 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB1P09429 AC090617.6-201ENST00000572790 443 ntTSL 3 BASIC16.33■□□□□ 0.2
HMGB1P09429 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGB1P09429 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC16.33■□□□□ 0.2
HMGB1P09429 AC091812.3-201ENST00000621362 345 ntBASIC16.33■□□□□ 0.2
HMGB1P09429 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGB1P09429 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGB1P09429 AL139099.5-201ENST00000635274 300 ntBASIC16.33■□□□□ 0.2
HMGB1P09429 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
HMGB1P09429 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB1P09429 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 ODCP-201ENST00000459650 1639 ntBASIC16.33■□□□□ 0.2
HMGB1P09429 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
HMGB1P09429 PPP2R2C-204ENST00000506140 1780 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB1P09429 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGB1P09429 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB1P09429 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HMGB1P09429 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 SRPRA-201ENST00000332118 3069 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB1P09429 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms