Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC15.53■□□□□ 0.08
COL4A3BPQ9Y5P4 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 LAIR1-201ENST00000348231 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 AC087386.2-201ENST00000623212 4637 ntBASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 GOSR2-235ENST00000640269 2190 ntTSL 5 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 SLC8A2-203ENST00000542837 3603 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 AC092978.1-202ENST00000637590 1327 ntBASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 JPT2-214ENST00000569765 782 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 AL359845.1-201ENST00000458202 1648 ntBASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC15.52■□□□□ 0.08
COL4A3BPQ9Y5P4 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 HNRNPH1-203ENST00000393432 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 TBC1D27-202ENST00000424239 1573 ntBASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 AC138969.2-201ENST00000532739 9932 ntBASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 ALAD-201ENST00000409155 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL4A3BPQ9Y5P4 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 AC005014.1-201ENST00000432006 2976 ntBASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 RN7SL470P-201ENST00000583069 259 ntBASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 U62317.3-201ENST00000608319 855 ntBASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 AC073911.3-201ENST00000624401 631 ntBASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
COL4A3BPQ9Y5P4 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC15.5■□□□□ 0.07
COL4A3BPQ9Y5P4 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms