Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM4P67936 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM4P67936 ALDH7A1-234ENST00000637782 1773 ntAPPRIS ALT1 TSL 5 BASIC15.64■□□□□ 0.09
TPM4P67936 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM4P67936 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM4P67936 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TPM4P67936 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC15.64■□□□□ 0.09
TPM4P67936 AOC1-204ENST00000467291 2857 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
TPM4P67936 RAB37-205ENST00000392614 2704 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
TPM4P67936 STXBP1-202ENST00000373302 3967 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TPM4P67936 AHCYP4-201ENST00000419201 1315 ntBASIC15.64■□□□□ 0.09
TPM4P67936 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
TPM4P67936 SRGAP3-202ENST00000383836 8656 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
TPM4P67936 STX3-207ENST00000633708 3111 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 ALPP-201ENST00000392027 2971 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
TPM4P67936 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM4P67936 MYO9B-206ENST00000595618 7623 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 DNMT3B-203ENST00000348286 4048 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 SPTBN2-210ENST00000611817 2890 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM4P67936 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM4P67936 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC15.63■□□□□ 0.09
TPM4P67936 HERPUD1-204ENST00000439977 2946 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 SMU1-201ENST00000397149 7122 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 Z98885.3-201ENST00000624882 1757 ntBASIC15.63■□□□□ 0.09
TPM4P67936 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM4P67936 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM4P67936 DYNC1I1-201ENST00000324972 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.63■□□□□ 0.09
TPM4P67936 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
TPM4P67936 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.63■□□□□ 0.09
TPM4P67936 CNN2P8-201ENST00000421872 913 ntBASIC15.63■□□□□ 0.09
TPM4P67936 AC002472.2-201ENST00000442739 958 ntBASIC15.63■□□□□ 0.09
TPM4P67936 AC012441.2-201ENST00000444843 739 ntBASIC15.63■□□□□ 0.09
TPM4P67936 HIST2H2BB-201ENST00000449108 381 ntBASIC15.63■□□□□ 0.09
TPM4P67936 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC15.63■□□□□ 0.09
TPM4P67936 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC15.63■□□□□ 0.09
TPM4P67936 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.63■□□□□ 0.09
TPM4P67936 NCK2-206ENST00000522586 490 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.63■□□□□ 0.09
TPM4P67936 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 AC003686.1-201ENST00000550956 1034 ntBASIC15.63■□□□□ 0.09
TPM4P67936 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.63■□□□□ 0.09
TPM4P67936 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC15.63■□□□□ 0.09
TPM4P67936 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 TNRC6C-207ENST00000588847 8527 ntAPPRIS P4 TSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 AC102953.2-201ENST00000609755 3026 ntBASIC15.63■□□□□ 0.09
TPM4P67936 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 ZIK1-201ENST00000307468 2510 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 PITX2-211ENST00000613094 3240 ntAPPRIS ALT1 TSL 5 BASIC15.63■□□□□ 0.09
TPM4P67936 MYRF-201ENST00000265460 5745 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM4P67936 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 MDH2-203ENST00000432020 1548 ntTSL 2 BASIC15.63■□□□□ 0.09
TPM4P67936 CELSR3-201ENST00000164024 11956 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
TPM4P67936 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 TUBGCP2-210ENST00000543663 4302 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 LINC01114-202ENST00000424321 2112 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 AMT-256ENST00000638063 1783 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 RSPO2-202ENST00000517781 2748 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 VWA8-203ENST00000379310 7147 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 DUT-208ENST00000559540 1441 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 SLC9A3P3-201ENST00000457608 2229 ntBASIC15.62■□□□□ 0.09
TPM4P67936 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC15.62■□□□□ 0.09
TPM4P67936 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 HOMER2P2-201ENST00000451621 847 ntBASIC15.62■□□□□ 0.09
TPM4P67936 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC15.62■□□□□ 0.09
TPM4P67936 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.62■□□□□ 0.09
TPM4P67936 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
TPM4P67936 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.62■□□□□ 0.09
TPM4P67936 C2orf69P2-201ENST00000562032 1123 ntBASIC15.62■□□□□ 0.09
TPM4P67936 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.62■□□□□ 0.09
TPM4P67936 AL355385.1-201ENST00000606123 409 ntBASIC15.62■□□□□ 0.09
TPM4P67936 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms