Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PYY2-201ENST00000315776 282 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 GUSBP10-201ENST00000417412 665 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 TMEM198B-204ENST00000484016 896 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 LY6E-208ENST00000520531 490 ntTSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 CFL1-214ENST00000534769 758 ntTSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 NAA40-205ENST00000539656 577 ntTSL 4 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 HERC2P11-201ENST00000562845 725 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 AC100756.2-201ENST00000569537 736 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 MIR4265-201ENST00000582152 99 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 AL139424.3-202ENST00000641619 917 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PEG13-201ENST00000631594 5667 ntBASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PHB-210ENST00000511832 1509 ntTSL 2 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 ALX4-201ENST00000329255 5750 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
TRIM39Q9HCM9 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 TBR1-201ENST00000389554 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.83□□□□□ -0.19
TRIM39Q9HCM9 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 GOLGA7B-203ENST00000596005 6378 ntTSL 2 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 HINT2P1-201ENST00000419438 481 ntBASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 GRPEL2P1-201ENST00000453145 339 ntBASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 RN7SL767P-201ENST00000493013 295 ntBASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 OR5BD1P-201ENST00000532527 817 ntBASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 COG4-212ENST00000564653 590 ntTSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 AC084781.1-201ENST00000613737 656 ntBASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 HPX-213ENST00000615166 826 ntTSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 AC242376.2-201ENST00000619355 883 ntBASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 AL805961.1-201ENST00000642026 753 ntBASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 AC073869.1-201ENST00000415574 2762 ntBASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 NAA15-202ENST00000398947 6072 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC13.83□□□□□ -0.2
TRIM39Q9HCM9 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 AC131212.3-201ENST00000624087 4219 ntBASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
TRIM39Q9HCM9 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms