Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 BPIFB5P-201ENST00000457066 1099 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 SLC25A15P3-201ENST00000505530 290 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 FOXN3-AS2-201ENST00000554071 1262 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 AC068831.5-201ENST00000557387 328 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC14.14□□□□□ -0.15
USP39Q53GS9 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
USP39Q53GS9 RPS5-204ENST00000598098 536 ntTSL 2 BASIC14.14□□□□□ -0.15
USP39Q53GS9 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC14.14□□□□□ -0.15
USP39Q53GS9 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 AL031595.1-201ENST00000623969 4709 ntBASIC14.14□□□□□ -0.15
USP39Q53GS9 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
USP39Q53GS9 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
USP39Q53GS9 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
USP39Q53GS9 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC14.14□□□□□ -0.15
USP39Q53GS9 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
USP39Q53GS9 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 ZNF436-AS1-201ENST00000335648 2547 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 CA12-201ENST00000178638 6413 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC14.13□□□□□ -0.15
USP39Q53GS9 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC14.13□□□□□ -0.15
USP39Q53GS9 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.13□□□□□ -0.15
USP39Q53GS9 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 GRIP2-204ENST00000619221 7977 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
USP39Q53GS9 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
USP39Q53GS9 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 HPGD-201ENST00000296521 1171 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
USP39Q53GS9 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
USP39Q53GS9 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC14.13□□□□□ -0.15
USP39Q53GS9 HLA-DPA2-205ENST00000433582 733 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC14.13□□□□□ -0.15
USP39Q53GS9 ASS1P2-201ENST00000439895 1223 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 AC069208.1-205ENST00000456299 576 ntTSL 4 BASIC14.13□□□□□ -0.15
USP39Q53GS9 AC083801.1-201ENST00000491689 358 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC14.13□□□□□ -0.15
USP39Q53GS9 PRSS3P1-201ENST00000503996 742 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC14.13□□□□□ -0.15
USP39Q53GS9 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC14.13□□□□□ -0.15
USP39Q53GS9 MT2A-202ENST00000561491 581 ntTSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC14.13□□□□□ -0.15
USP39Q53GS9 AL009176.1-201ENST00000607876 650 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 AL139339.2-201ENST00000608063 657 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC14.13□□□□□ -0.15
USP39Q53GS9 SEPT7-202ENST00000399034 4399 ntTSL 5 BASIC14.13□□□□□ -0.15
USP39Q53GS9 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 SGCA-201ENST00000262018 1432 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 KRT8P18-201ENST00000413425 1445 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 LINC00115-201ENST00000473798 1317 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 AC064801.2-201ENST00000625052 1303 ntBASIC14.13□□□□□ -0.15
USP39Q53GS9 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
USP39Q53GS9 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
USP39Q53GS9 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
USP39Q53GS9 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
USP39Q53GS9 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC14.12□□□□□ -0.15
USP39Q53GS9 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms