Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 FCRL1-207ENST00000491942 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 RPL3P9-201ENST00000463217 1183 ntBASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 AC090152.1-202ENST00000518993 1079 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 SKINT1L-204ENST00000604015 540 ntTSL 4 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC16.5■□□□□ 0.23
CCDC88AQ3V6T2 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 DLX4-206ENST00000611342 1662 ntBASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 AC139749.1-202ENST00000617529 3139 ntBASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 SPTLC1P3-201ENST00000403408 259 ntBASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 MKNK1-205ENST00000428112 1270 ntAPPRIS P3 TSL 2 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 TMEM256P1-201ENST00000430550 340 ntBASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 RN7SL479P-201ENST00000472003 300 ntBASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 AC025419.1-201ENST00000537250 690 ntTSL 3 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 ZNF268-208ENST00000539248 759 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 ZNF268-212ENST00000542711 861 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 C17orf62-234ENST00000584503 584 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 AL645940.1-201ENST00000606432 594 ntTSL 2 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 AC148476.1-201ENST00000622182 705 ntBASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CCDC88AQ3V6T2 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 SNORA30.1-201ENST00000363193 129 ntBASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 AC245128.1-201ENST00000400864 1294 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 AC138392.1-201ENST00000427577 921 ntBASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 PDLIM2-212ENST00000443561 701 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 RN7SL646P-201ENST00000492969 297 ntBASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 IFI27L1-203ENST00000553664 647 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 RN7SL162P-201ENST00000579233 292 ntBASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 APOL5-201ENST00000249044 1438 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 DRD3-203ENST00000460779 1557 ntAPPRIS P3 TSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 GOLGA8N-205ENST00000569659 1791 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 PLA2G2E-201ENST00000375116 785 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 RPSAP61-201ENST00000412542 878 ntBASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 AL590399.1-204ENST00000430302 781 ntTSL 5 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 AC104212.2-201ENST00000478813 628 ntBASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 RN7SL76P-201ENST00000482435 289 ntBASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 CCNL2P1-201ENST00000512846 969 ntBASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 PDCD2-205ENST00000537445 1114 ntTSL 3 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 AC008555.6-201ENST00000605047 458 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 LUC7L3-223ENST00000625349 408 ntTSL 2 BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 HOPX-202ENST00000337881 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
CCDC88AQ3V6T2 PUF60-204ENST00000456095 1736 ntTSL 5 BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 83.9 ms