Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 AP002761.4-201ENST00000565433 3361 ntBASIC13.16□□□□□ -0.3
SOX3P41225 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 AGAP12P-201ENST00000585227 2359 ntBASIC13.16□□□□□ -0.3
SOX3P41225 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC13.16□□□□□ -0.3
SOX3P41225 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.15□□□□□ -0.3
SOX3P41225 PLOD2-202ENST00000360060 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
SOX3P41225 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.15□□□□□ -0.3
SOX3P41225 OR8T1P-201ENST00000421347 918 ntBASIC13.15□□□□□ -0.3
SOX3P41225 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC13.15□□□□□ -0.3
SOX3P41225 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 NAGK-204ENST00000443872 878 ntTSL 3 BASIC13.15□□□□□ -0.3
SOX3P41225 ALG1L13P-202ENST00000519320 584 ntBASIC13.15□□□□□ -0.3
SOX3P41225 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 MAX-218ENST00000557746 571 ntTSL 4 BASIC13.15□□□□□ -0.3
SOX3P41225 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 PRPSAP1-206ENST00000446526 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 MAMDC4-202ENST00000445819 3895 ntAPPRIS ALT2 TSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 NUB1-201ENST00000413040 3180 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 ITGA6-202ENST00000409080 5306 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC13.15□□□□□ -0.3
SOX3P41225 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 NLGN3-201ENST00000358741 3046 ntAPPRIS P4 TSL 5 BASIC13.15□□□□□ -0.3
SOX3P41225 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
SOX3P41225 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC13.15□□□□□ -0.31
SOX3P41225 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 LINC00115-201ENST00000473798 1317 ntBASIC13.14□□□□□ -0.31
SOX3P41225 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.14□□□□□ -0.31
SOX3P41225 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX3P41225 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC13.14□□□□□ -0.31
SOX3P41225 KRT8P31-201ENST00000504812 1408 ntBASIC13.14□□□□□ -0.31
SOX3P41225 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
SOX3P41225 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
SOX3P41225 C12orf73-201ENST00000378090 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX3P41225 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms