Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
SMARCA1P28370 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC15.8■□□□□ 0.12
SMARCA1P28370 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
SMARCA1P28370 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC15.79■□□□□ 0.12
SMARCA1P28370 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.79■□□□□ 0.12
SMARCA1P28370 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC15.79■□□□□ 0.12
SMARCA1P28370 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 PPIL3-205ENST00000409449 756 ntTSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 RPL17P11-201ENST00000417593 544 ntBASIC15.79■□□□□ 0.12
SMARCA1P28370 PTGES3-203ENST00000436399 941 ntTSL 2 BASIC15.79■□□□□ 0.12
SMARCA1P28370 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC15.79■□□□□ 0.12
SMARCA1P28370 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC15.79■□□□□ 0.12
SMARCA1P28370 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC15.79■□□□□ 0.12
SMARCA1P28370 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC15.79■□□□□ 0.12
SMARCA1P28370 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC15.79■□□□□ 0.12
SMARCA1P28370 MIR5572-201ENST00000583188 137 ntBASIC15.79■□□□□ 0.12
SMARCA1P28370 NAT9-224ENST00000583757 583 ntTSL 3 BASIC15.79■□□□□ 0.12
SMARCA1P28370 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 AC008687.7-203ENST00000598442 551 ntTSL 4 BASIC15.79■□□□□ 0.12
SMARCA1P28370 CSTP2-201ENST00000610599 398 ntBASIC15.79■□□□□ 0.12
SMARCA1P28370 AP003419.4-201ENST00000616071 517 ntBASIC15.79■□□□□ 0.12
SMARCA1P28370 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 AP001065.2-201ENST00000617205 644 ntBASIC15.79■□□□□ 0.12
SMARCA1P28370 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
SMARCA1P28370 LINC01922-202ENST00000567168 1704 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 TMEM181-201ENST00000367090 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 SMTN-223ENST00000619644 3227 ntTSL 2 BASIC15.79■□□□□ 0.12
SMARCA1P28370 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
SMARCA1P28370 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
SMARCA1P28370 ZNF609-202ENST00000416172 3863 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 RFESD-201ENST00000311364 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.78■□□□□ 0.12
SMARCA1P28370 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.78■□□□□ 0.12
SMARCA1P28370 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.78■□□□□ 0.12
SMARCA1P28370 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.78■□□□□ 0.12
SMARCA1P28370 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 U3.5-201ENST00000363448 216 ntBASIC15.78■□□□□ 0.12
SMARCA1P28370 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC012362.1-201ENST00000434906 739 ntBASIC15.78■□□□□ 0.12
SMARCA1P28370 GALP-202ENST00000440823 889 ntTSL 5 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC008026.2-201ENST00000495438 348 ntBASIC15.78■□□□□ 0.12
SMARCA1P28370 LINC00634-202ENST00000505157 222 ntBASIC15.78■□□□□ 0.12
SMARCA1P28370 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC111149.2-202ENST00000518355 599 ntTSL 4 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC15.78■□□□□ 0.12
SMARCA1P28370 C8orf31-207ENST00000524181 1199 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AC013553.1-201ENST00000560906 267 ntBASIC15.78■□□□□ 0.12
SMARCA1P28370 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 RETN-203ENST00000629642 400 ntTSL 5 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms