Protein–RNA interactions for Protein: P26640

VARS, Valine--tRNA ligase, humanhuman

Known RBP Predictions only

Length 1,264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VARSP26640 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
VARSP26640 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.83□□□□□ -0.2
VARSP26640 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.83□□□□□ -0.2
VARSP26640 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC13.83□□□□□ -0.2
VARSP26640 TUBBP5-203ENST00000508529 1334 ntBASIC13.83□□□□□ -0.2
VARSP26640 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC13.83□□□□□ -0.2
VARSP26640 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
VARSP26640 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC13.83□□□□□ -0.2
VARSP26640 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
VARSP26640 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
VARSP26640 AL928654.5-201ENST00000624831 2501 ntBASIC13.83□□□□□ -0.2
VARSP26640 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC13.83□□□□□ -0.2
VARSP26640 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VARSP26640 DMBT1P1-203ENST00000636837 4628 ntBASIC13.83□□□□□ -0.2
VARSP26640 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
VARSP26640 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 KBTBD7-201ENST00000379483 4734 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
VARSP26640 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 CYB561D1-206ENST00000496961 3424 ntTSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 AL365181.3-201ENST00000605886 3222 ntBASIC13.82□□□□□ -0.2
VARSP26640 CPT1C-204ENST00000405931 2785 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
VARSP26640 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
VARSP26640 AL392088.1-201ENST00000428364 670 ntBASIC13.82□□□□□ -0.2
VARSP26640 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC13.82□□□□□ -0.2
VARSP26640 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC13.82□□□□□ -0.2
VARSP26640 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC13.82□□□□□ -0.2
VARSP26640 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.82□□□□□ -0.2
VARSP26640 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 CHMP4BP1-201ENST00000556017 588 ntBASIC13.82□□□□□ -0.2
VARSP26640 AC099684.2-201ENST00000574520 870 ntTSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 KRT18P8-201ENST00000581937 1246 ntBASIC13.82□□□□□ -0.2
VARSP26640 MIR4706-201ENST00000582134 82 ntBASIC13.82□□□□□ -0.2
VARSP26640 SPCS2P2-201ENST00000603270 608 ntBASIC13.82□□□□□ -0.2
VARSP26640 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 JADE1-209ENST00000511647 3560 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 DLX1-201ENST00000341900 2130 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
VARSP26640 FER1L4-204ENST00000430275 3281 ntTSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
VARSP26640 PCDHGB7-202ENST00000612073 2785 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
VARSP26640 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
VARSP26640 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC13.81□□□□□ -0.2
VARSP26640 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
VARSP26640 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
VARSP26640 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 EIF3C-201ENST00000331666 3145 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 ZBTB20-206ENST00000464560 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
VARSP26640 AC015921.1-201ENST00000574885 2546 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 SERBP1-204ENST00000370995 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
VARSP26640 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
VARSP26640 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms