Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 MTUS1-229ENST00000634613 1193 ntTSL 5 BASIC16.12■□□□□ 0.17
ERCC3P19447 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC3P19447 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC16.12■□□□□ 0.17
ERCC3P19447 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC3P19447 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC16.12■□□□□ 0.17
ERCC3P19447 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
ERCC3P19447 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC3P19447 AC090505.1-201ENST00000430515 1834 ntBASIC16.12■□□□□ 0.17
ERCC3P19447 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC3P19447 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
ERCC3P19447 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
ERCC3P19447 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.12■□□□□ 0.17
ERCC3P19447 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.12■□□□□ 0.17
ERCC3P19447 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC3P19447 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
ERCC3P19447 AC016397.2-201ENST00000624848 1985 ntBASIC16.11■□□□□ 0.17
ERCC3P19447 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 TPRX1-202ENST00000535759 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC3P19447 RET-205ENST00000615310 4337 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC3P19447 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 AC097374.1-201ENST00000568768 6624 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
ERCC3P19447 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC3P19447 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC16.11■□□□□ 0.17
ERCC3P19447 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC16.11■□□□□ 0.17
ERCC3P19447 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC16.11■□□□□ 0.17
ERCC3P19447 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 MT2A-202ENST00000561491 581 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC16.11■□□□□ 0.17
ERCC3P19447 AC010632.2-201ENST00000588369 1224 ntBASIC16.11■□□□□ 0.17
ERCC3P19447 AC008972.2-201ENST00000606587 494 ntBASIC16.11■□□□□ 0.17
ERCC3P19447 RNF146-211ENST00000609447 607 ntTSL 4 BASIC16.11■□□□□ 0.17
ERCC3P19447 HMGB1P24-201ENST00000611897 328 ntBASIC16.11■□□□□ 0.17
ERCC3P19447 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
ERCC3P19447 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
ERCC3P19447 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 PSEN2-201ENST00000366782 2465 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
ERCC3P19447 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
ERCC3P19447 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC16.11■□□□□ 0.17
ERCC3P19447 KIF6-203ENST00000394362 2394 ntTSL 5 BASIC16.11■□□□□ 0.17
ERCC3P19447 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
ERCC3P19447 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC3P19447 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC3P19447 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 AC005906.2-205ENST00000640862 1522 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC3P19447 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
ERCC3P19447 CES3-202ENST00000394037 3817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC3P19447 KRT18P46-201ENST00000435568 1279 ntBASIC16.1■□□□□ 0.17
ERCC3P19447 KRT18P15-201ENST00000458108 1291 ntBASIC16.1■□□□□ 0.17
ERCC3P19447 AC025186.1-201ENST00000478174 870 ntBASIC16.1■□□□□ 0.17
ERCC3P19447 AC100858.1-201ENST00000514059 1228 ntBASIC16.1■□□□□ 0.17
ERCC3P19447 AC090136.2-201ENST00000517809 420 ntBASIC16.1■□□□□ 0.17
ERCC3P19447 FOXN3-AS2-201ENST00000554071 1262 ntBASIC16.1■□□□□ 0.17
ERCC3P19447 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC16.1■□□□□ 0.17
ERCC3P19447 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC3P19447 MAPKAP1-204ENST00000373498 3131 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
ERCC3P19447 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
ERCC3P19447 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC16.1■□□□□ 0.17
ERCC3P19447 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
ERCC3P19447 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms