Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 KRT40-202ENST00000398486 1772 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 LINC02381-202ENST00000635070 1341 ntTSL 5 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 SERPING1-202ENST00000340687 1719 ntTSL 5 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 AC074085.2-201ENST00000416734 428 ntBASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 AK2P2-201ENST00000439142 405 ntBASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 AC106748.1-201ENST00000454801 384 ntBASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 AC145285.1-201ENST00000469929 694 ntBASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 MIR2277-201ENST00000515916 93 ntBASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 ELP5-210ENST00000573657 687 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 SNHG5-211ENST00000587692 1029 ntTSL 3 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 ZEB1-AS1-207ENST00000606286 476 ntTSL 4 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 Metazoa_SRP.198-201ENST00000610617 323 ntBASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 B3GNT4-202ENST00000535274 2938 ntAPPRIS P1 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC8.92□□□□□ -0.98
ALMS1Q8TCU4 AC020763.3-201ENST00000625095 2904 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 GAP43-201ENST00000305124 1691 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 KHDC1L-201ENST00000370388 635 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 C1orf158-201ENST00000376210 695 ntTSL 3 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 RN7SL328P-201ENST00000484033 300 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 CMC2-202ENST00000486645 766 ntTSL 3 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC022733.2-201ENST00000520487 531 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 NKAPP1-203ENST00000554109 573 ntTSL 4 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC137932.2-201ENST00000562995 1205 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 RHOH-219ENST00000614836 2114 ntAPPRIS P1 TSL 3 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 MAGEB1-201ENST00000378981 1866 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 IP6K2-221ENST00000449610 1673 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 POM121L14P-201ENST00000406100 1558 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 NEK11-213ENST00000511262 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 MYL7-201ENST00000223364 612 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 PFN1P3-201ENST00000443612 402 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 PFN1P4-201ENST00000450970 402 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC140481.2-201ENST00000457169 695 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 CMTM1-206ENST00000457188 765 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 RN7SL43P-201ENST00000463926 291 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC020893.2-201ENST00000506083 723 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 CMTM1-215ENST00000531885 590 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AL391097.1-201ENST00000432706 1620 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC008038.1-201ENST00000634247 1314 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 LIPC-204ENST00000433326 1484 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 CDK7-202ENST00000502604 1455 ntTSL 5 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 PNLIPRP2-201ENST00000579578 1482 ntAPPRIS P5 TSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 FAM96A-202ENST00000380290 826 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 MED15P7-201ENST00000435410 822 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC073465.1-201ENST00000456671 464 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 PRKRIP1-202ENST00000462601 884 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 RN7SL16P-201ENST00000476316 269 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AL353708.1-201ENST00000567904 1257 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC012146.4-201ENST00000575546 271 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC007731.1-203ENST00000583722 474 ntTSL 2 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AD000091.1-201ENST00000592379 287 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 AC064862.6-203ENST00000605139 691 ntTSL 5 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 FAM230A-201ENST00000615181 315 ntTSL 5 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 CDC20-201ENST00000310955 1675 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 Z98259.1-201ENST00000564261 1697 ntBASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 SULT1A3-202ENST00000395138 1326 ntAPPRIS P2 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC8.91□□□□□ -0.98
ALMS1Q8TCU4 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC8.91□□□□□ -0.98
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms