Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 FOXM1-210ENST00000627656 3487 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 AL022313.4-201ENST00000562756 2046 ntBASIC13.17□□□□□ -0.3
SOX3P41225 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 KRT17P5-201ENST00000332088 839 ntBASIC13.17□□□□□ -0.3
SOX3P41225 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX3P41225 AL583805.1-201ENST00000391389 531 ntBASIC13.17□□□□□ -0.3
SOX3P41225 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX3P41225 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC13.17□□□□□ -0.3
SOX3P41225 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX3P41225 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX3P41225 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX3P41225 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 KRT8P1-201ENST00000557533 1207 ntBASIC13.17□□□□□ -0.3
SOX3P41225 MIR3677-201ENST00000578964 60 ntBASIC13.17□□□□□ -0.3
SOX3P41225 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC13.17□□□□□ -0.3
SOX3P41225 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX3P41225 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX3P41225 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX3P41225 SEPT6-201ENST00000343984 2693 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
SOX3P41225 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.17□□□□□ -0.3
SOX3P41225 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC13.17□□□□□ -0.3
SOX3P41225 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 DCAF8-201ENST00000326837 3972 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 XIRP1-203ENST00000421646 2596 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
SOX3P41225 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 AC005014.1-201ENST00000432006 2976 ntBASIC13.17□□□□□ -0.3
SOX3P41225 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
SOX3P41225 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 LGALS12-202ENST00000340246 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 AC091046.1-201ENST00000331871 207 ntBASIC13.16□□□□□ -0.3
SOX3P41225 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC13.16□□□□□ -0.3
SOX3P41225 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC13.16□□□□□ -0.3
SOX3P41225 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 AP000358.1-201ENST00000456260 156 ntBASIC13.16□□□□□ -0.3
SOX3P41225 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 LINC02417-201ENST00000542449 515 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC13.16□□□□□ -0.3
SOX3P41225 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 SKA2-205ENST00000580541 689 ntTSL 3 BASIC13.16□□□□□ -0.3
SOX3P41225 AC016629.1-201ENST00000596579 586 ntBASIC13.16□□□□□ -0.3
SOX3P41225 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 HCG18-245ENST00000602550 559 ntTSL 4 BASIC13.16□□□□□ -0.3
SOX3P41225 AC084346.2-201ENST00000607097 949 ntBASIC13.16□□□□□ -0.3
SOX3P41225 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
SOX3P41225 EML1-203ENST00000334192 4064 ntTSL 5 BASIC13.16□□□□□ -0.3
SOX3P41225 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
SOX3P41225 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms