Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AL161937.2-202ENST00000435301 733 ntTSL 3 BASIC13.76□□□□□ -0.21
COL6A3P12111 AL035250.2-201ENST00000440889 620 ntTSL 3 BASIC13.76□□□□□ -0.21
COL6A3P12111 AL929472.4-201ENST00000447422 691 ntBASIC13.76□□□□□ -0.21
COL6A3P12111 LAMTOR5-AS1-202ENST00000457535 817 ntTSL 3 BASIC13.76□□□□□ -0.21
COL6A3P12111 RN7SL255P-201ENST00000470639 296 ntBASIC13.76□□□□□ -0.21
COL6A3P12111 AC018755.1-201ENST00000601315 1182 ntBASIC13.76□□□□□ -0.21
COL6A3P12111 LINC00963-211ENST00000608369 961 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 IL1RAP-210ENST00000434491 1565 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
COL6A3P12111 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 RPL5-202ENST00000370321 1043 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 DMKN-202ENST00000392206 458 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 SERF2-204ENST00000402131 586 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 AP001630.1-201ENST00000428410 437 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 ATF4P3-201ENST00000433309 1056 ntBASIC13.76□□□□□ -0.21
COL6A3P12111 AC097066.1-201ENST00000456878 683 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 RN7SL771P-201ENST00000482328 298 ntBASIC13.76□□□□□ -0.21
COL6A3P12111 MYL6-210ENST00000548400 573 ntTSL 3 BASIC13.76□□□□□ -0.21
COL6A3P12111 LINC02340-202ENST00000620494 573 ntTSL 4 BASIC13.76□□□□□ -0.21
COL6A3P12111 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 AC008038.1-201ENST00000634247 1314 ntBASIC13.76□□□□□ -0.21
COL6A3P12111 C2-211ENST00000469372 1906 ntTSL 2 BASIC13.76□□□□□ -0.21
COL6A3P12111 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
COL6A3P12111 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 ARRB2-207ENST00000571206 1659 ntTSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
COL6A3P12111 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 OR2A25-203ENST00000641663 1741 ntAPPRIS P1 BASIC13.75□□□□□ -0.21
COL6A3P12111 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 APOBEC3F-202ENST00000381565 616 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 NEDD8-MDP1-202ENST00000534348 595 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 STAMBP-211ENST00000536064 845 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 COPZ1-214ENST00000552218 797 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 TSPAN16-204ENST00000590327 997 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 NICN1-208ENST00000615713 1921 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 C8orf86-202ENST00000437935 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 AL928654.5-201ENST00000624831 2501 ntBASIC13.75□□□□□ -0.21
COL6A3P12111 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 PRM1-201ENST00000312511 424 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 CHN2-209ENST00000421775 825 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 STYXL1-206ENST00000431581 1147 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 AC012615.6-203ENST00000590531 272 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 AD000091.1-201ENST00000592379 287 ntBASIC13.75□□□□□ -0.21
COL6A3P12111 AC132216.1-201ENST00000610375 1158 ntBASIC13.75□□□□□ -0.21
COL6A3P12111 SERPING1-213ENST00000619430 634 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 AC127526.5-201ENST00000637148 1110 ntBASIC13.75□□□□□ -0.21
COL6A3P12111 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 SLC5A11-203ENST00000449109 2069 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 CDK2-201ENST00000266970 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 MED8-201ENST00000290663 1483 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
COL6A3P12111 CYTH4-202ENST00000402997 633 ntTSL 4 BASIC13.75□□□□□ -0.21
COL6A3P12111 LINC00969-204ENST00000420851 868 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 AC008940.1-201ENST00000438117 785 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 RN7SL43P-201ENST00000463926 291 ntBASIC13.75□□□□□ -0.21
COL6A3P12111 AC092656.1-202ENST00000515843 998 ntTSL 4 BASIC13.75□□□□□ -0.21
COL6A3P12111 AC008014.1-201ENST00000551503 829 ntTSL 3 BASIC13.75□□□□□ -0.21
COL6A3P12111 AC026254.3-201ENST00000584490 322 ntBASIC13.75□□□□□ -0.21
COL6A3P12111 CBR3-AS1-205ENST00000608622 586 ntTSL 5 BASIC13.75□□□□□ -0.21
COL6A3P12111 LYNX1-205ENST00000620006 868 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
COL6A3P12111 CES1P1-201ENST00000421606 1704 ntBASIC13.75□□□□□ -0.21
COL6A3P12111 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A3P12111 FDFT1-218ENST00000530664 1761 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A3P12111 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
COL6A3P12111 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.74□□□□□ -0.21
COL6A3P12111 KRTAP19-2-201ENST00000334055 380 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
COL6A3P12111 LILRB1-AS1-201ENST00000456337 554 ntTSL 4 BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms