Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 FBXL18-201ENST00000382368 3498 ntAPPRIS P2 TSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 RPL8P2-201ENST00000430538 502 ntBASIC13.19□□□□□ -0.3
SOX3P41225 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC13.19□□□□□ -0.3
SOX3P41225 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC13.19□□□□□ -0.3
SOX3P41225 CEP164P1-201ENST00000455142 418 ntBASIC13.19□□□□□ -0.3
SOX3P41225 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC13.19□□□□□ -0.3
SOX3P41225 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC13.19□□□□□ -0.3
SOX3P41225 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC13.19□□□□□ -0.3
SOX3P41225 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC13.19□□□□□ -0.3
SOX3P41225 AC007718.1-201ENST00000621078 280 ntBASIC13.19□□□□□ -0.3
SOX3P41225 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 BTRC-203ENST00000393441 6084 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SOX3P41225 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SOX3P41225 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 CAP2P1-201ENST00000557743 1390 ntBASIC13.19□□□□□ -0.3
SOX3P41225 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.19□□□□□ -0.3
SOX3P41225 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SOX3P41225 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
SOX3P41225 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 KRT18P9-201ENST00000604826 1300 ntBASIC13.18□□□□□ -0.3
SOX3P41225 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC13.18□□□□□ -0.3
SOX3P41225 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 NCLP1-201ENST00000445357 1963 ntBASIC13.18□□□□□ -0.3
SOX3P41225 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 UBE2F-223ENST00000612130 2135 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SOX3P41225 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 PATL2-207ENST00000560775 1913 ntAPPRIS P3 TSL 5 BASIC13.18□□□□□ -0.3
SOX3P41225 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
SOX3P41225 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC13.18□□□□□ -0.3
SOX3P41225 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 RPSAP15-201ENST00000448168 861 ntBASIC13.18□□□□□ -0.3
SOX3P41225 EEF1DP6-201ENST00000449232 372 ntBASIC13.18□□□□□ -0.3
SOX3P41225 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.18□□□□□ -0.3
SOX3P41225 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 AC005833.2-201ENST00000527518 1249 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.18□□□□□ -0.3
SOX3P41225 AC079328.1-201ENST00000560358 952 ntBASIC13.18□□□□□ -0.3
SOX3P41225 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC13.18□□□□□ -0.3
SOX3P41225 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 BEND7-201ENST00000341083 2239 ntAPPRIS P3 TSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 UBE2A-202ENST00000371558 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.18□□□□□ -0.3
SOX3P41225 KCNG4-201ENST00000308251 5179 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
SOX3P41225 BRD7P5-201ENST00000299197 1822 ntBASIC13.18□□□□□ -0.3
SOX3P41225 TP73-207ENST00000378290 1831 ntTSL 2 BASIC13.18□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms